Installation error: No module named 'LoadData'

[pvap3]

Hello, I am trying to run poreseq but i am getting following error,

Traceback (most recent call last): File "/home/iob/.local/bin/poreseq", line 11, in load_entry_point('poreseq', 'console_scripts', 'poreseq')() File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 490, in load_entry_point return get_distribution(dist).load_entry_point(group, name) File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 2854, in load_entry_point return ep.load() File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 2445, in load return self.resolve() File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 2451, in resolve module = import(self.module_name, fromlist=['name'], level=0) File "/home/iob/Downloads/poreseq/poreseq/init.py", line 1, in from LoadData import LoadAlignedEvents ModuleNotFoundError: No module named 'LoadData'

Help will be really appreciated.

[tszalay]

Hi, I'm sorry, I'm not sure what I can tell you here. This tool has been superseded by a number of better options in the last 5-6 years, and I'm not even sure it's able to run anymore. It looks like it's probably a python 2 - python 3 problem, but I'm not entirely sure about that. Realistically I should probably remove it from the package repository entirely, but I would highly recommend you try to find a more recent tool for error correcting nanopore data.

[pvap3]

Thank you so much for such nice and clear response. Can you suggest me any tools?

On Fri, 26 Feb 2021, 05:39 Tamas Szalay, notifications@github.com wrote:

Hi, I'm sorry, I'm not sure what I can tell you here. This tool has been superseded by a number of better options in the last 5-6 years, and I'm not even sure it's able to run anymore. It looks like it's probably a python 2

• python 3 problem, but I'm not entirely sure about that. Realistically I should probably remove it from the package repository entirely, but I would highly recommend you try to find a more recent tool for error correcting nanopore data.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/tszalay/poreseq/issues/12#issuecomment-786316107, or unsubscribe https://github.com/notifications/unsubscribe-auth/ASVWRRZ4RLBYQY44G7NHRILTA3RCPANCNFSM4YF4KQ7Q .

[tszalay]

I'm not really sure, I haven't worked with nanopore sequencing data in almost six years, long enough that all of the tools since then are completely different. I would suggest looking for a recent review article or contacting someone still in the field. Good luck!

[pvap3]

Thank you.

On Sat, 27 Feb 2021, 21:51 Tamas Szalay, notifications@github.com wrote:

I'm not really sure, I haven't worked with nanopore sequencing data in almost six years, long enough that all of the tools since then are completely different. I would suggest looking for a recent review article or contacting someone still in the field. Good luck!

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/tszalay/poreseq/issues/12#issuecomment-787097428, or unsubscribe https://github.com/notifications/unsubscribe-auth/ASVWRR4SATYOJHKRWHOXGJDTBELZTANCNFSM4YF4KQ7Q .