Closed huguyuehuhu closed 5 years ago
Looks like your error output is telling you to install mkl with conda install mkl-service
;)
Thanks for the reply, but I when fixed the above Warnings by conda install mkl-service,
and conda install numpy scipy mkl
the following the tips in here and here. The error is still here. Besides. which OS you used, Centos , Ubuntu or Other OS ?
` (env_complex) gyhu@mic119:/DATA/119/gyhu/code/complex$ python fb15k_run.py 2019-09-10 19:42:56,341 (EFE) [INFO] Nb entities: 14951 2019-09-10 19:42:56,342 (EFE) [INFO] Nb relations: 1345 2019-09-10 19:42:56,342 (EFE) [INFO] Nb obs triples: 483142 2019-09-10 19:43:05,586 (EFE) [INFO] Learning rate: 0.5 2019-09-10 19:43:05,587 (EFE) [INFO] Max iter: 1000 2019-09-10 19:43:05,587 (EFE) [INFO] Generated negatives ratio: 10 2019-09-10 19:43:05,587 (EFE) [INFO] Batch size: 4831 2019-09-10 19:43:05,587 (EFE) [INFO] Starting grid search on: Complex_Logistic_Model
You can find the C code in this temporary file: /tmp/theano_compilation_error_x5vcf38i
Traceback (most recent call last):
File "fb15k_run.py", line 39, in vinserti128 $0x1,%xmm0,%ymm1,%ymm0'. /tmp/ccikfP39.s:1680: Error: no such instruction:
vextracti128 $0x1,%ymm0,16(%r12)'. ", '[AdvancedSubtensor1(e1, tubes)]')
`
I don't think this is OS related, have a look at this, it seems similar to your problem: https://github.com/Theano/Theano/issues/5604 https://github.com/Theano/Theano/issues/3780
Thanks, I have tried them, but there is still the same error, I will try some other ways later, thanks.
vextracti128 and vinserti128 are instructions from the AVX2 set, that started with Haswell generation CPUs (2013), the easiest way would be to run on a more recent machine if possible.
Good luck and come back tell us if you find a solution :)
As this page points out that it is a bug of GCC 4.8.0 (similar, my GCC is 4.8.3), and it gives out two ways to solve this problem.
Way1: Force no-avx2 with gcc -mno-avx2. the vextracti128 is an avx2 feature so the compiler won't use this optimization.
Way2: Upgrade the gcc to 4.8.5
For way2, it is troublesome for me because that I work on a big computing cluster with many nodes. For way1, I actually don't know how to add it. Therefore, I just list the solutions here in case that somebody else meet the same problem.
Following your suggestion, I just shift to a new machine with higher GCC version, it works around, So, I think the Way2 maybe works but I won't bother to try.
Finally, thanks for your kind help again. You can close this issue if you like.
Maybe you can try to pass the -mno-avx2
flag by setting theano.config.gcc.cxxflags
at the beginning of the python script?
( http://deeplearning.net/software/theano/library/config.html#config-attributes )
theano.config.gcc.cxxflags="-march=core2"
OR theano.config.gcc.cxxflags="-mno-avx2"
in my python script, both of them didn't work.THEANO_FLAGS='gcc.cxxflags=-march=core2' python my_model.py
, it works.theano.config.gcc.cxxflags="-march=core2"
could not work. Anyway, I can temporarily use THEANO_FLAGS='gcc.cxxflags=-march=core2' python my_model.py
to run the repo .Great, good news=)
Hi, thanks for sharing this repo. I am new to Theano. When I run the command
python fb15k_run.py
in your Readme, I got an error. Can you provide me any advice to solve it ? Thanks!(env_complex) gyhu@mic119:/DATA/119/gyhu/code/complex$ python fb15k_run.py WARNING (theano.configdefaults): install mkl with
conda install mkl-service`: No module named 'mkl' WARNING (theano.tensor.blas): Using NumPy C-API based implementation for BLAS functions. 2019-09-10 16:23:59,712 (EFE) [INFO] Nb entities: 14951 2019-09-10 16:23:59,713 (EFE) [INFO] Nb relations: 1345 2019-09-10 16:23:59,713 (EFE) [INFO] Nb obs triples: 483142 2019-09-10 16:24:07,993 (EFE) [INFO] Learning rate: 0.5 2019-09-10 16:24:07,994 (EFE) [INFO] Max iter: 1000 2019-09-10 16:24:07,994 (EFE) [INFO] Generated negatives ratio: 10 2019-09-10 16:24:07,994 (EFE) [INFO] Batch size: 4831 2019-09-10 16:24:07,994 (EFE) [INFO] Starting grid search on: Complex_Logistic_ModelYou can find the C code in this temporary file: /tmp/theano_compilation_error_8ipm74 Traceback (most recent call last): File "fb15k_run.py", line 39, in
fb15kexp.grid_search_on_all_models(all_params, embedding_size_grid = [emb_size], lmbda_grid = [lmbda], nb_runs = 1)
File "/DATA/119/gyhu/code/complex/efe/experiment.py", line 73, in grid_search_on_all_models
self.run_model(model_s,cur_params)
File "/DATA/119/gyhu/code/complex/efe/experiment.py", line 94, in run_model
model.fit(self.train, self.valid, Parameters(**vars(params)), self.n_entities, self.n_relations, self. n_entities, self.scorer)
File "/DATA/119/gyhu/code/complex/efe/models.py", line 152, in fit
self.setup_params_for_train(train_triples, valid_triples, hparams)
File "/DATA/119/gyhu/code/complex/efe/models.py", line 132, in setup_params_for_train
self.pred_func_compiled = theano.function(self.get_pred_symb_vars(), self.pred_func)
File "/DATA/119/gyhu/soft/Anaconda3/envs/env_complex/lib/python3.6/site-packages/theano/compile/function .py", line 317, in function
output_keys=output_keys)
File "/DATA/119/gyhu/soft/Anaconda3/envs/env_complex/lib/python3.6/site-packages/theano/compile/pfunc.py ", line 486, in pfunc
output_keys=output_keys)
File "/DATA/119/gyhu/soft/Anaconda3/envs/env_complex/lib/python3.6/site-packages/theano/compile/function _module.py", line 1841, in orig_function
fn = m.create(defaults)
File "/DATA/119/gyhu/soft/Anaconda3/envs/env_complex/lib/python3.6/site-packages/theano/compile/function _module.py", line 1715, in create
input_storage=input_storage_lists, storage_map=storage_map)
File "/DATA/119/gyhu/soft/Anaconda3/envs/env_complex/lib/python3.6/site-packages/theano/gof/link.py", li ne 699, in make_thunk
storage_map=storage_map)[:3]
File "/DATA/119/gyhu/soft/Anaconda3/envs/env_complex/lib/python3.6/site-packages/theano/gof/vm.py", line 1091, in make_all
impl=impl))
File "/DATA/119/gyhu/soft/Anaconda3/envs/env_complex/lib/python3.6/site-packages/theano/gof/op.py", line 955, in make_thunk
no_recycling)
File "/DATA/119/gyhu/soft/Anaconda3/envs/env_complex/lib/python3.6/site-packages/theano/gof/op.py", line 858, in make_c_thunk
output_storage=node_output_storage)
File "/DATA/119/gyhu/soft/Anaconda3/envs/env_complex/lib/python3.6/site-packages/theano/gof/cc.py", line 1217, in make_thunk
keep_lock=keep_lock)
File "/DATA/119/gyhu/soft/Anaconda3/envs/env_complex/lib/python3.6/site-packages/theano/gof/cc.py", line 1157, in compile__
keep_lock=keep_lock)
File "/DATA/119/gyhu/soft/Anaconda3/envs/env_complex/lib/python3.6/site-packages/theano/gof/cc.py", line 1624, in cthunk_factory
key=key, lnk=self, keep_lock=keep_lock)
File "/DATA/119/gyhu/soft/Anaconda3/envs/env_complex/lib/python3.6/site-packages/theano/gof/cmodule.py", line 1189, in module_from_key
module = lnk.compile_cmodule(location)
File "/DATA/119/gyhu/soft/Anaconda3/envs/env_complex/lib/python3.6/site-packages/theano/gof/cc.py", line 1527, in compile_cmodule
preargs=preargs)
File "/DATA/119/gyhu/soft/Anaconda3/envs/env_complex/lib/python3.6/site-packages/theano/gof/cmodule.py", line 2396, in compile_str
(status, compile_stderr.replace('\n', '. ')))
Exception: ('The following error happened while compiling the node', AdvancedSubtensor1(e1, tubes), '\n', "Compilation failed (return status=1): /tmp/ccpoOASs.s: Assembler messages:. /tmp/ccpoOASs.s:1675: Error: no such instruction:
vinserti128 $0x1,%xmm0,%ymm1,%ymm0'. /tmp/ccpoOASs.s:1680: Error: no such instructio n:
vextracti128 $0x1,%ymm0,16(%r12)'. ", '[AdvancedSubtensor1(e1, tubes)]')`