README.md file with commands and answers to questions
4.5/5
Exercise
Points Possible
Grade
Command to run chicago in step 1.1
1
1
Answer to question in step 1.2
1
0.5
List of top 6 promoter-promoter interactions from step 2.2
1
1
List of top 6 promoter-enhancer interactions from step 2.2
1
1
Answer to question in step 2.3
1
1
Your convert_washU_to_UCSC.py script from step 2.1
3/3
The output interaction bed file from running convert_washU_to_UCSC.py
1/1
The two UCSC genome browser screen shots of your selected promoter-enhancer interactions
1/1
Total: 9.5/10
Great work! For full credit:
Step 1.2: Provide more details on why these enrichments make sense. Would you expect an enrichment of interactions with both heterochromatin and euchromatin? What about CTCF?
Please submit your assignment for week 8.README.md
file with commands and answers to questions4.5/5
chicago
in step 1.1Your
convert_washU_to_UCSC.py
script from step 2.13/3
The output interaction bed file from running
convert_washU_to_UCSC.py
1/1
The two UCSC genome browser screen shots of your selected promoter-enhancer interactions
1/1
Total: 9.5/10
Great work! For full credit: