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tttianhao / CLEAN

CLEAN: a contrastive learning model for high-quality functional prediction of proteins
MIT License
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EC confidence threshold #52

Open ZhuLvs opened 1 month ago

ZhuLvs commented 1 month ago

Dear Author,

Thank you for your outstanding work on CLEAN. In my current research, I am attempting to design enzyme proteins from scratch and using CLEAN to predict EC numbers. At what confidence threshold would you recommend further experimental validation of the predicted sequences? Additionally, I have noticed that in my design process, when CLEAN predicts an EC number with a confidence score greater than 0.8, the corresponding sequences often have low final pLDDT scores when predicted using AF3.

ZhuLvs commented 1 month ago

I am using the quick-start version and the web version.