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turbomam / biosample-xmldb-sqldb

Tools for loading NCBI Biosample into an XML database and then transforming that into a SQL database
MIT License
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Use host mounts for the BaseX and Postgres data directories #12

Open turbomam opened 6 months ago

turbomam commented 6 months ago

Seemed to work seamlessly in MacOS, but doesn't work in Linux (due to directory ownership?)

Therefore, the the BaseX and Postgres data directories are container-only and would be lost if the container was deleted, updated, etc.

turbomam commented 6 months ago

For example, this mapping isn't working in Ubuntu: 

-v `pwd`/shared-basex-data:/srv/basex/data

And even though a shared Postgres data directory can't be used, the user running the makefile can't delete it either