Closed turbomam closed 6 months ago
apt update/upgrade
git clone https://github.com/turbomam/biosample-xmldb-sqldb.git
sudo apt install pipx
pipx install poetry
pipx ensurepath
sudo apt install -y make build-essential libssl-dev zlib1g-dev libbz2-dev libreadline-dev libsqlite3-dev wget curl llvm libncurses5-dev libncursesw5-dev xz-utils tk-dev libffi-dev liblzma-dev python3-openssl git
curl https://pyenv.run | bash
# Load pyenv automatically by appending # the following to # ~/.bash_profile if it exists, otherwise ~/.profile (for login shells) # and ~/.bashrc (for interactive shells) : export PYENV_ROOT="$HOME/.pyenv" [[ -d $PYENV_ROOT/bin ]] && export PATH="$PYENV_ROOT/bin:$PATH" eval "$(pyenv init -)" # Restart your shell for the changes to take effect. # Load pyenv-virtualenv automatically by adding # the following to ~/.bashrc: eval "$(pyenv virtualenv-init -)"
Implement with copy/paste and
cat >> ~/.profile
cat >> ~/.bashrc
pyenv install 3.10.13
pyenv global 3.10.13
screen (via instance connect?)
for pkg in docker.io docker-doc docker-compose docker-compose-v2 podman-docker containerd runc; do sudo apt-get remove $pkg; done
sudo apt install glances
poetry install
make pre-basex-all
watch -d ls -lh biosample-xmldb-sqldb/downloads/
echo "</BioSampleSet>" >> shared-chunks/biosample_set_from_37000001.xml
make basex-all
sudo apt-get install postgresql-client
make postgres-pre-pivot
https://docs.aws.amazon.com/kinesisvideostreams/latest/dg/gs-ubuntu.html