Closed Selphie14100 closed 1 year ago
tvdboom
commented
1 year ago What OS are you on? Is it macOS? Also, can you check in your site-packages directory if the atom directory is present? Also, how can you run import atom; atom.__version__ 5.1.1 if you weren't able to import it in the first place?
Selphie14100
commented
1 year ago using Win 10. It is in site-packages directory. If I use pip to show it I get (basicai) C:\Users\User>pip show atom_ml WARNING: Ignoring invalid distribution -ttpx (c:\users\user\anaconda3\envs\basicai\lib\site-packages) Name: atom-ml Version: 5.1.1 Summary: A Python package for fast exploration of machine learning pipelines Home-page: Author: Author-email: Mavs m.524687@gmail.com License: Location: c:\users\user\anaconda3\envs\basicai\lib\site-packages
I am trying to use it in a jupyter notebook
tvdboom
commented
1 year ago Ok, so it is installed but for some reason it can not be imported. Maybe your pythonpath is wrong? what happens when you copy the atom-ml directory from site-packages to your current working directory?
Selphie14100
commented
1 year ago ModuleNotFoundError Traceback (most recent call last)
~\AppData\Local\Temp\ipykernel_16608\3307495225.py in
~\atom__init.py in
~\atom\api.py in
~\atom\atom.py in
~\atom\baserunner.py in
~\atom\basemodel.py in
ModuleNotFoundError: No module named 'mlflow'
tvdboom
commented
1 year ago oke, in this case you are missing some dependencies. are you sure you installed atom in the same environment your kernel is on? could you try and reinstall atom again and see if the output changed? or just install mlflow separately.
Selphie14100
commented
1 year ago I'm new at this but as I can install other packages happily and I'm getting errors with this one is the problem more likely to be with the package in some way? I'm not keen on putting directories and files all over the place. I'm trying to keep it tidy in virtual environments.
Selphie14100
commented
1 year ago I have tried installing it in another virtual environment by itself and got
~\atom\utils.py in
ModuleNotFoundError: No module named 'modin'
tvdboom
commented
1 year ago are you using pip or conda? In the new env the error is clear. you are missing the modin package, which is a dependency of atom. The question is why isn't it being installed with the package. I tried it myself in a new virtual env and it works fine, so I am not sure it's the package
Selphie14100
commented
1 year ago I've been using pip rather than conda
Selphie14100
commented
1 year ago Tried with conda (basicai) C:\Users\User>conda config --set channel_priority strict
(basicai) C:\Users\User>conda install atom-ml Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
Current channels:
To search for alternate channels that may provide the conda package you're looking for, navigate to
https://anaconda.organd use the search bar at the top of the page.
tvdboom
commented
1 year ago you need to use conda install -c conda-forge atom-ml. But still, it should work with pip. It looks to me that the issue is related to environments. I think you didn't install atom in the same env as your kernel is running. That's why, when you import atom from the directory you copy pasted, it misses some dependencies.
Selphie14100
commented
1 year ago Agreed there is something environmental going on.. However I've got it running on Google Colab so all Good!!! Thank you for your help. This can be closed as far as I am concerned
tvdboom
commented
1 year ago alright. don't hesitate to open a new issue if something else arises
Contribution guidelines
Description
I cant install ATOM-ml and use it in a jupyter notebook
It is listed in pip list in my environment. However I can't access it nor is it listed in a jupyter notebook in the same environment,
Expected behaviour
I expect import atom to work
Actual behaviour
Tried installing from in Jupyter
import sys !{sys.executable} -m pip install atom-ml[full]
import atom
Output below
Collecting atom-ml[full] Using cached atom_ml-5.1.1-py3-none-any.whl (222 kB) Collecting numpy>=1.23.5 Using cached numpy-1.24.2-cp39-cp39-win_amd64.whl (14.9 MB) Collecting dill>=0.3.6 Using cached dill-0.3.6-py3-none-any.whl (110 kB) Requirement already satisfied: joblib>=1.1.0 in c:\users\user\anaconda3\lib\site-packages (from atom-ml[full]) (1.2.0) Requirement already satisfied: shap>=0.41.0 in c:\users\user\anaconda3\lib\site-packages (from atom-ml[full]) (0.41.0) Collecting scikit-learn>=1.2.1 Using cached scikit_learn-1.2.2-cp39-cp39-win_amd64.whl (8.4 MB) Collecting matplotlib>=3.6.3 Using cached matplotlib-3.7.1-cp39-cp39-win_amd64.whl (7.6 MB) Collecting ray[serve]>=2.3.0 Using cached ray-2.3.0-cp39-cp39-win_amd64.whl (21.7 MB) Collecting plotly>=5.13.1 Using cached plotly-5.13.1-py2.py3-none-any.whl (15.2 MB) Requirement already satisfied: imbalanced-learn>=0.10.1 in c:\users\user\anaconda3\lib\site-packages (from atom-ml[full]) (0.10.1) Collecting modin[ray]>=0.18.1 Using cached modin-0.19.0-py3-none-any.whl (1.0 MB) Collecting zoofs>=0.1.26 Using cached zoofs-0.1.26-py3-none-any.whl Collecting scikit-learn-intelex>=2023.0.1 Using cached scikit_learn_intelex-2023.0.1-py39-none-win_amd64.whl (89 kB) Collecting pandas>=1.5.3 Using cached pandas-1.5.3-cp39-cp39-win_amd64.whl (10.9 MB) Collecting mlflow>=2.2.0 Using cached mlflow-2.2.2-py3-none-any.whl (17.6 MB) Requirement already satisfied: optuna>=3.1.0 in c:\users\user\anaconda3\lib\site-packages (from atom-ml[full]) (3.1.0) Collecting dagshub<=0.2.10 Using cached dagshub-0.2.10-py3-none-any.whl (46 kB) Collecting featuretools>=1.23.0 Using cached featuretools-1.23.0-py3-none-any.whl (555 kB) Collecting nltk>=3.8.1 Using cached nltk-3.8.1-py3-none-any.whl (1.5 MB) Collecting gplearn>=0.4.2 Using cached gplearn-0.4.2-py3-none-any.whl (25 kB) Collecting scipy>=1.9.3 Using cached scipy-1.10.1-cp39-cp39-win_amd64.whl (42.5 MB) Requirement already satisfied: category-encoders>=2.5.1 in c:\users\user\anaconda3\lib\site-packages (from atom-ml[full]) (2.6.0) Collecting ydata-profiling>=4.1.0 Using cached ydata_profiling-4.1.1-py2.py3-none-any.whl (344 kB) Collecting gradio>=3.19.1 Using cached gradio-3.22.1-py3-none-any.whl (15.8 MB) Requirement already satisfied: lightgbm>=3.3.5 in c:\users\user\anaconda3\lib\site-packages (from atom-ml[full]) (3.3.5) Collecting evalml>=0.68.0 Using cached evalml-0.71.0-py3-none-any.whl (6.5 MB) Requirement already satisfied: catboost>=1.1.1 in c:\users\user\anaconda3\lib\site-packages (from atom-ml[full]) (1.1.1) Collecting xgboost>=1.7.4 Using cached xgboost-1.7.4-py3-none-win_amd64.whl (89.1 MB) Requirement already satisfied: schemdraw>=0.15 in c:\users\user\anaconda3\lib\site-packages (from atom-ml[full]) (0.15) Requirement already satisfied: wordcloud>=1.8.2 in c:\users\user\anaconda3\lib\site-packages (from atom-ml[full]) (1.8.2.2) Collecting explainerdashboard>=0.4.2 Using cached explainerdashboard-0.4.2.1-py3-none-any.whl (286 kB) Requirement already satisfied: six in c:\users\user\anaconda3\lib\site-packages (from catboost>=1.1.1->atom-ml[full]) (1.16.0) Requirement already satisfied: graphviz in c:\users\user\anaconda3\lib\site-packages (from catboost>=1.1.1->atom-ml[full]) (0.20.1) Requirement already satisfied: statsmodels>=0.9.0 in c:\users\user\anaconda3\lib\site-packages (from category-encoders>=2.5.1->atom-ml[full]) (0.13.2) Requirement already satisfied: patsy>=0.5.1 in c:\users\user\anaconda3\lib\site-packages (from category-encoders>=2.5.1->atom-ml[full]) (0.5.2) Collecting GitPython>=3.1.29 Using cached GitPython-3.1.31-py3-none-any.whl (184 kB) Collecting httpx==0.22.0 Using cached httpx-0.22.0-py3-none-any.whl (84 kB) Collecting fusepy>=3 Using cached fusepy-3.0.1-py3-none-any.whl Requirement already satisfied: PyYAML>=5 in c:\users\user\anaconda3\lib\site-packages (from dagshub<=0.2.10->atom-ml[full]) (6.0) Requirement already satisfied: appdirs>=1.4.4 in 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altair>=4.2.0 Using cached altair-4.2.2-py3-none-any.whl (813 kB) Collecting websockets>=10.0 Using cached websockets-10.4-cp39-cp39-win_amd64.whl (101 kB) Collecting pydub Using cached pydub-0.25.1-py2.py3-none-any.whl (32 kB) Requirement already satisfied: requests in c:\users\user\anaconda3\lib\site-packages (from gradio>=3.19.1->atom-ml[full]) (2.28.1) Requirement already satisfied: orjson in c:\users\user\anaconda3\lib\site-packages (from gradio>=3.19.1->atom-ml[full]) (3.8.7) Collecting uvicorn Using cached uvicorn-0.21.1-py3-none-any.whl (57 kB) Collecting fastapi Using cached fastapi-0.95.0-py3-none-any.whl (57 kB) Collecting aiofiles Using cached aiofiles-23.1.0-py3-none-any.whl (14 kB) Requirement already satisfied: fsspec in c:\users\user\anaconda3\lib\site-packages (from gradio>=3.19.1->atom-ml[full]) (2022.7.1) Requirement already satisfied: typing-extensions in c:\users\user\anaconda3\lib\site-packages (from gradio>=3.19.1->atom-ml[full]) (4.3.0) Collecting pydantic Using 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(0.5.1) Requirement already satisfied: pycparser in c:\users\user\anaconda3\lib\site-packages (from cffi>=1.0.1->argon2-cffi-bindings->argon2-cffi->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets>=7.5->evalml>=0.68.0->atom-ml[full]) (2.21) Installing collected packages: texttable, tbb, rfc3986, pywin32, PyMeeus, pydub, py-spy, opencensus-context, nvidia-ml-py, korean-lunar-calendar, htmlmin, fusepy, ffmpy, distlib, ansicon, WTForms, websockets, waitress, vowpalwabbit, virtualenv, uc-micro-py, typeguard, tokenize-rt, tangled-up-in-unicode, sqlparse, smmap, querystring-parser, python-multipart, pydantic, plotly, packaging, oyaml, numpy, multimethod, multidict, mdurl, llvmlite, jinxed, jinja2, hijri-converter, h11, googleapis-common-protos, frozenlist, dill, daal, convertdate, colorful, async-timeout, aiorwlock, aiofiles, yarl, uvicorn, starlette, scipy, pyarrow, pandas, numba, nltk, markdown-it-py, linkify-it-py, huggingface-hub, httpcore, holidays, gitdb, docker, databricks-cli, daal4py, contourpy, blessed, aiosignal, zoofs, xgboost, visions, scikit-learn, ray, modin, mdit-py-plugins, matplotlib, imagehash, httpx, gpustat, google-api-core, GitPython, Flask-WTF, fastapi, altair, aiohttp, woodwork, scikit-learn-intelex, phik, opencensus, lime, gradio, gplearn, flask-simplelogin, dash-bootstrap-components, dash-auth, dagshub, category-encoders, aiohttp-cors, ydata-profiling, mlflow, explainerdashboard, featuretools, nlp-primitives, atom-ml, evalml Attempting uninstall: tbb Found existing installation: TBB 0.2
ERROR: Cannot uninstall 'TBB'. It is a distutils installed project and thus we cannot accurately determine which files belong to it which would lead to only a partial uninstall.
ModuleNotFoundError Traceback (most recent call last) ~\AppData\Local\Temp\ipykernel_9756\2535248663.py in
2 get_ipython().system('{sys.executable} -m pip install atom-ml[full]')
3
----> 4 import atom
ModuleNotFoundError: No module named 'atom'
Steps to reproduce
No response
Python and package version
import sys; sys.version3.10.9import atom; atom.__version__5.1.1