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twang15 / K562-Analysis

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Figures #14

Open twang15 opened 2 years ago

twang15 commented 2 years ago

TF cooperativity

  1. asymmetry vs symmetry, independence/correlation, pair-wise cooperativity relationship

TF-cooperativity-1.pdf TF-cooperativity-2.pdf

  1. Use "in silico crispr" to validate prediction of the model

    • what is in silico crispr?
    • what is in silico PCR?

  2. protein distance: ~ 35 bp

  3. nucleosome distance range: ~ 150 bp

twang15 commented 2 years ago

summary.pdf caveat.pdf

twang15 commented 2 years ago

kipio.pdf

twang15 commented 2 years ago

formalization.pdf

Sequence motif

sequence-motif.pdf

Log odds of sequence motif to a background

sequence-motif-log-odds.pdf

convolution-sequence.pdf thresholding-scores.pdf building-block.pdf

twang15 commented 2 years ago

regulatory-elements.pdf atacseq.pdf

twang15 commented 2 years ago
twang15 commented 2 years ago

pitfalls.pdf