Closed rica01 closed 3 years ago
iFA88
commented
3 years ago Something is wrong with your python.. i have used this with 3.4 3.7 3.8 even 3.9 without any problem..
Please paste the whole command and the stdout what you running.
And a pip3 --version also please.
rica01
commented
3 years ago here you go kind sir:
[ricardo@bart]$ pip3 --version
pip 9.0.1 from /usr/lib/python2.7/dist-packages (python 3.6)
[ricardo@bart]$ pip3 install python-rocksdb
Collecting python-rocksdb
Using cached https://files.pythonhosted.org/packages/94/81/9a8e498a26ec34da9e1ae87e831468aedb4a6ba42aa9ea779b97896cfea7/python-rocksdb-0.7.0.tar.gz
Requirement already satisfied: setuptools>=25 in /usr/lib/python2.7/dist-packages (from python-rocksdb)
Building wheels for collected packages: python-rocksdb
Running setup.py bdist_wheel for python-rocksdb ... error
Complete output from command /mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/bin/python3.6 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-ubkmf5jc/python-rocksdb/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpx72fduw2pip-wheel- --python-tag cp36:
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.6
creating build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/interfaces.py -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/merge_operators.py -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/__init__.py -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/errors.py -> build/lib.linux-x86_64-3.6/rocksdb
creating build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/test_memtable.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/test_options.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/__init__.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/test_db.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
running egg_info
writing python_rocksdb.egg-info/PKG-INFO
writing dependency_links to python_rocksdb.egg-info/dependency_links.txt
writing requirements to python_rocksdb.egg-info/requires.txt
writing top-level names to python_rocksdb.egg-info/top_level.txt
reading manifest file 'python_rocksdb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'python_rocksdb.egg-info/SOURCES.txt'
copying rocksdb/_rocksdb.cpp -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/_rocksdb.pyx -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/backup.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/cache.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/comparator.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/db.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/env.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/filter_policy.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/iterator.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/logger.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/memtablerep.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/merge_operator.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/options.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/slice_.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/slice_transform.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/snapshot.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/status.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/std_memory.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/table_factory.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/universal_compaction.pxd -> build/lib.linux-x86_64-3.6/rocksdb
creating build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/comparator_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/filter_policy_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/memtable_factories.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/merge_operator_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/slice_transform_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/utils.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/write_batch_iter_helper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
running build_ext
cythoning rocksdb/_rocksdb.pyx to rocksdb/_rocksdb.cpp
Error compiling Cython file:
------------------------------------------------------------
...
cdef _ColumnFamilyHandle real_handle = self._ref()
if real_handle is None:
raise ValueError(f"{self} is no longer a valid ColumnFamilyHandle!")
return real_handle.handle
def __eq__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:801:4: Special method __eq__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
and self.id == fast_other.id
and self._ref == fast_other._ref
)
return False
def __lt__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:812:4: Special method __lt__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
if isinstance(other, ColumnFamilyHandle):
return self.id < other.id
return NotImplemented
# Since @total_ordering isn't a thing for cython
def __ne__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:819:4: Special method __ne__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
# Since @total_ordering isn't a thing for cython
def __ne__(self, other):
return not self == other
def __gt__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:822:4: Special method __gt__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
return not self == other
def __gt__(self, other):
return other < self
def __le__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:825:4: Special method __le__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
return other < self
def __le__(self, other):
return not other < self
def __ge__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:828:4: Special method __ge__ must be implemented via __richcmp__
building 'rocksdb._rocksdb' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/rocksdb
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/include -I/usr/include/python3.6m -c rocksdb/_rocksdb.cpp -o build/temp.linux-x86_64-3.6/rocksdb/_rocksdb.o -std=c++11 -O3 -Wall -Wextra -Wconversion -fno-strict-aliasing -fno-rtti
rocksdb/_rocksdb.cpp:1:2: error: #error Do not use this file, it is the result of a failed Cython compilation.
#error Do not use this file, it is the result of a failed Cython compilation.
^~~~~
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Failed building wheel for python-rocksdb
Running setup.py clean for python-rocksdb
Failed to build python-rocksdb
Installing collected packages: python-rocksdb
Running setup.py install for python-rocksdb ... error
Complete output from command /mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/bin/python3.6 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-ubkmf5jc/python-rocksdb/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-funayfvz-record/install-record.txt --single-version-externally-managed --compile --install-headers /mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/include/site/python3.6/python-rocksdb:
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.6
creating build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/interfaces.py -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/merge_operators.py -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/__init__.py -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/errors.py -> build/lib.linux-x86_64-3.6/rocksdb
creating build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/test_memtable.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/test_options.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/__init__.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/test_db.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
running egg_info
writing python_rocksdb.egg-info/PKG-INFO
writing dependency_links to python_rocksdb.egg-info/dependency_links.txt
writing requirements to python_rocksdb.egg-info/requires.txt
writing top-level names to python_rocksdb.egg-info/top_level.txt
reading manifest file 'python_rocksdb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'python_rocksdb.egg-info/SOURCES.txt'
copying rocksdb/_rocksdb.cpp -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/_rocksdb.pyx -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/backup.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/cache.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/comparator.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/db.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/env.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/filter_policy.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/iterator.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/logger.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/memtablerep.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/merge_operator.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/options.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/slice_.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/slice_transform.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/snapshot.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/status.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/std_memory.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/table_factory.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/universal_compaction.pxd -> build/lib.linux-x86_64-3.6/rocksdb
creating build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/comparator_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/filter_policy_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/memtable_factories.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/merge_operator_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/slice_transform_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/utils.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/write_batch_iter_helper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
running build_ext
cythoning rocksdb/_rocksdb.pyx to rocksdb/_rocksdb.cpp
Error compiling Cython file:
------------------------------------------------------------
...
cdef _ColumnFamilyHandle real_handle = self._ref()
if real_handle is None:
raise ValueError(f"{self} is no longer a valid ColumnFamilyHandle!")
return real_handle.handle
def __eq__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:801:4: Special method __eq__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
and self.id == fast_other.id
and self._ref == fast_other._ref
)
return False
def __lt__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:812:4: Special method __lt__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
if isinstance(other, ColumnFamilyHandle):
return self.id < other.id
return NotImplemented
# Since @total_ordering isn't a thing for cython
def __ne__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:819:4: Special method __ne__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
# Since @total_ordering isn't a thing for cython
def __ne__(self, other):
return not self == other
def __gt__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:822:4: Special method __gt__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
return not self == other
def __gt__(self, other):
return other < self
def __le__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:825:4: Special method __le__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
return other < self
def __le__(self, other):
return not other < self
def __ge__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:828:4: Special method __ge__ must be implemented via __richcmp__
building 'rocksdb._rocksdb' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/rocksdb
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/include -I/usr/include/python3.6m -c rocksdb/_rocksdb.cpp -o build/temp.linux-x86_64-3.6/rocksdb/_rocksdb.o -std=c++11 -O3 -Wall -Wextra -Wconversion -fno-strict-aliasing -fno-rtti
rocksdb/_rocksdb.cpp:1:2: error: #error Do not use this file, it is the result of a failed Cython compilation.
#error Do not use this file, it is the result of a failed Cython compilation.
^~~~~
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Command "/mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/bin/python3.6 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-ubkmf5jc/python-rocksdb/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-funayfvz-record/install-record.txt --single-version-externally-managed --compile --install-headers /mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/include/site/python3.6/python-rocksdb" failed with error code 1 in /tmp/pip-build-ubkmf5jc/python-rocksdb/
This is definitely weird: pip 9.0.1 from /usr/lib/python2.7/dist-packages (python 3.6) That means you mixed up python2 libs with python3.
iFA88
commented
3 years ago I dont know how can you fix that.. but maybe a python compile/install can help..
I recommend to download the latest stable python: https://www.python.org/ftp/python/3.9.6/Python-3.9.6.tar.xz
Login as root (su) for installation:
Unpack, then:
./configure
make
make test
make installMay you need install some lib when configure fails.
When the installation has been finished check your python version:
python3 --version
If you have 3.9 thats great.
You may should reinstall pip:
Download https://bootstrap.pypa.io/get-pip.py then python3 get-pip.py
rica01
commented
3 years ago definetly a problem with Python. But i cannot recompile, its a server and a ton of people use it. Let me see what i can do...
iFA88
commented
3 years ago In that case you can install alternative with make altinstall instead of make install. With that you dont overwrite anything.
rica01
commented
3 years ago Hello @iFA88. I believe I fixed my python installation but i still find the same error with Cython.
Cython 0.26.115:55:29 || ~/sepsis/rocksdb/build
[ricardo@bart]$ python
Python 3.6.9 (default, Jan 26 2021, 15:33:00)
[GCC 8.4.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> 5:56:15 || ~/sepsis/rocksdb/build
[ricardo@bart]$ pip -V
pip 21.2.3 from /mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/lib/python3.6/site-packages/pip-21.2.3-py3.6.egg/pip (python 3.6)and after issues pip install python-rocksdb:
(sepsis_py_venv) (base)
15:49:34 || ~/sepsis/rocksdb
[ricardo@bart]$ pip install python-rocksdb
Collecting python-rocksdb
Using cached python-rocksdb-0.7.0.tar.gz (219 kB)
Requirement already satisfied: setuptools>=25 in /usr/lib/python2.7/dist-packages (from python-rocksdb) (39.0.1)
Building wheels for collected packages: python-rocksdb
Building wheel for python-rocksdb (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/bin/python3.6 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-aw0_pkky/python-rocksdb_a6ae572284eb44a394b5420d5a55a589/setup.py'"'"'; __file__='"'"'/tmp/pip-install-aw0_pkky/python-rocksdb_a6ae572284eb44a394b5420d5a55a589/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rqq7vtla
cwd: /tmp/pip-install-aw0_pkky/python-rocksdb_a6ae572284eb44a394b5420d5a55a589/
Complete output (145 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.6
creating build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/interfaces.py -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/merge_operators.py -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/__init__.py -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/errors.py -> build/lib.linux-x86_64-3.6/rocksdb
creating build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/test_memtable.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/test_options.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/__init__.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/test_db.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
running egg_info
writing python_rocksdb.egg-info/PKG-INFO
writing dependency_links to python_rocksdb.egg-info/dependency_links.txt
writing requirements to python_rocksdb.egg-info/requires.txt
writing top-level names to python_rocksdb.egg-info/top_level.txt
reading manifest file 'python_rocksdb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'python_rocksdb.egg-info/SOURCES.txt'
copying rocksdb/_rocksdb.cpp -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/_rocksdb.pyx -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/backup.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/cache.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/comparator.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/db.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/env.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/filter_policy.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/iterator.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/logger.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/memtablerep.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/merge_operator.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/options.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/slice_.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/slice_transform.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/snapshot.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/status.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/std_memory.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/table_factory.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/universal_compaction.pxd -> build/lib.linux-x86_64-3.6/rocksdb
creating build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/comparator_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/filter_policy_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/memtable_factories.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/merge_operator_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/slice_transform_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/utils.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/write_batch_iter_helper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
running build_ext
cythoning rocksdb/_rocksdb.pyx to rocksdb/_rocksdb.cpp
Error compiling Cython file:
------------------------------------------------------------
...
cdef _ColumnFamilyHandle real_handle = self._ref()
if real_handle is None:
raise ValueError(f"{self} is no longer a valid ColumnFamilyHandle!")
return real_handle.handle
def __eq__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:801:4: Special method __eq__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
and self.id == fast_other.id
and self._ref == fast_other._ref
)
return False
def __lt__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:812:4: Special method __lt__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
if isinstance(other, ColumnFamilyHandle):
return self.id < other.id
return NotImplemented
# Since @total_ordering isn't a thing for cython
def __ne__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:819:4: Special method __ne__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
# Since @total_ordering isn't a thing for cython
def __ne__(self, other):
return not self == other
def __gt__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:822:4: Special method __gt__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
return not self == other
def __gt__(self, other):
return other < self
def __le__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:825:4: Special method __le__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
return other < self
def __le__(self, other):
return not other < self
def __ge__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:828:4: Special method __ge__ must be implemented via __richcmp__
building 'rocksdb._rocksdb' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/rocksdb
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/include -I/usr/include/python3.6m -c rocksdb/_rocksdb.cpp -o build/temp.linux-x86_64-3.6/rocksdb/_rocksdb.o -std=c++11 -O3 -Wall -Wextra -Wconversion -fno-strict-aliasing -fno-rtti
rocksdb/_rocksdb.cpp:1:2: error: #error Do not use this file, it is the result of a failed Cython compilation.
#error Do not use this file, it is the result of a failed Cython compilation.
^~~~~
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for python-rocksdb
Running setup.py clean for python-rocksdb
Failed to build python-rocksdb
Installing collected packages: python-rocksdb
Running setup.py install for python-rocksdb ... error
ERROR: Command errored out with exit status 1:
command: /mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/bin/python3.6 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-aw0_pkky/python-rocksdb_a6ae572284eb44a394b5420d5a55a589/setup.py'"'"'; __file__='"'"'/tmp/pip-install-aw0_pkky/python-rocksdb_a6ae572284eb44a394b5420d5a55a589/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-it_s1abb/install-record.txt --single-version-externally-managed --compile --install-headers /mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/include/site/python3.6/python-rocksdb
cwd: /tmp/pip-install-aw0_pkky/python-rocksdb_a6ae572284eb44a394b5420d5a55a589/
Complete output (145 lines):
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.6
creating build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/interfaces.py -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/merge_operators.py -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/__init__.py -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/errors.py -> build/lib.linux-x86_64-3.6/rocksdb
creating build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/test_memtable.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/test_options.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/__init__.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
copying rocksdb/tests/test_db.py -> build/lib.linux-x86_64-3.6/rocksdb/tests
running egg_info
writing python_rocksdb.egg-info/PKG-INFO
writing dependency_links to python_rocksdb.egg-info/dependency_links.txt
writing requirements to python_rocksdb.egg-info/requires.txt
writing top-level names to python_rocksdb.egg-info/top_level.txt
reading manifest file 'python_rocksdb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'python_rocksdb.egg-info/SOURCES.txt'
copying rocksdb/_rocksdb.cpp -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/_rocksdb.pyx -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/backup.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/cache.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/comparator.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/db.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/env.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/filter_policy.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/iterator.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/logger.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/memtablerep.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/merge_operator.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/options.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/slice_.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/slice_transform.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/snapshot.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/status.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/std_memory.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/table_factory.pxd -> build/lib.linux-x86_64-3.6/rocksdb
copying rocksdb/universal_compaction.pxd -> build/lib.linux-x86_64-3.6/rocksdb
creating build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/comparator_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/filter_policy_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/memtable_factories.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/merge_operator_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/slice_transform_wrapper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/utils.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
copying rocksdb/cpp/write_batch_iter_helper.hpp -> build/lib.linux-x86_64-3.6/rocksdb/cpp
running build_ext
cythoning rocksdb/_rocksdb.pyx to rocksdb/_rocksdb.cpp
Error compiling Cython file:
------------------------------------------------------------
...
cdef _ColumnFamilyHandle real_handle = self._ref()
if real_handle is None:
raise ValueError(f"{self} is no longer a valid ColumnFamilyHandle!")
return real_handle.handle
def __eq__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:801:4: Special method __eq__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
and self.id == fast_other.id
and self._ref == fast_other._ref
)
return False
def __lt__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:812:4: Special method __lt__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
if isinstance(other, ColumnFamilyHandle):
return self.id < other.id
return NotImplemented
# Since @total_ordering isn't a thing for cython
def __ne__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:819:4: Special method __ne__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
# Since @total_ordering isn't a thing for cython
def __ne__(self, other):
return not self == other
def __gt__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:822:4: Special method __gt__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
return not self == other
def __gt__(self, other):
return other < self
def __le__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:825:4: Special method __le__ must be implemented via __richcmp__
Error compiling Cython file:
------------------------------------------------------------
...
return other < self
def __le__(self, other):
return not other < self
def __ge__(self, other):
^
------------------------------------------------------------
rocksdb/_rocksdb.pyx:828:4: Special method __ge__ must be implemented via __richcmp__
building 'rocksdb._rocksdb' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/rocksdb
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/include -I/usr/include/python3.6m -c rocksdb/_rocksdb.cpp -o build/temp.linux-x86_64-3.6/rocksdb/_rocksdb.o -std=c++11 -O3 -Wall -Wextra -Wconversion -fno-strict-aliasing -fno-rtti
rocksdb/_rocksdb.cpp:1:2: error: #error Do not use this file, it is the result of a failed Cython compilation.
#error Do not use this file, it is the result of a failed Cython compilation.
^~~~~
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/bin/python3.6 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-aw0_pkky/python-rocksdb_a6ae572284eb44a394b5420d5a55a589/setup.py'"'"'; __file__='"'"'/tmp/pip-install-aw0_pkky/python-rocksdb_a6ae572284eb44a394b5420d5a55a589/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-it_s1abb/install-record.txt --single-version-externally-managed --compile --install-headers /mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/include/site/python3.6/python-rocksdb Check the logs for full command output.
Check the log output:
Requirement already satisfied: setuptools>=25 in /usr/lib/python2.7/dist-packages (from python-rocksdb) (39.0.1)
iFA88
commented
3 years ago What you get for this command? :
python -c "import sys; print(sys.version_info);print('\n'.join(sys.path))"
rica01
commented
3 years ago 16:08:16 || ~/sepsis/rocksdb/build
[ricardo@bart]$ python -c "import sys; print(sys.version_info);print('\n'.join(sys.path))"
sys.version_info(major=3, minor=6, micro=9, releaselevel='final', serial=0)
/mnt/compgen/inhouse/lib/python2.7/site-packages/VaPoR-0.0.1-py2.7-linux-x86_64.egg
/mnt/compgen/inhouse/lib/python2.7/site-packages/svtyper-0.7.0-py2.7.egg
/mnt/compgen/inhouse/lib/python2.7/site-packages/cytoolz-0.9.0.1-py2.7-linux-x86_64.egg
/mnt/compgen/inhouse/lib/python2.7/site-packages/toolz-0.9.0-py2.7.egg
/usr/lib/python2.7/dist-packages
/mnt/compgen/inhouse/lib/python2.7/site-packages
/usr/lib/python36.zip
/usr/lib/python3.6
/usr/lib/python3.6/lib-dynload
/mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/lib/python3.6/site-packagesCheck the log output:
Requirement already satisfied: setuptools>=25 in /usr/lib/python2.7/dist-packages (from python-rocksdb) (39.0.1)
Why would an already satisfied requirement cause an error?
iFA88
commented
3 years ago Paths are still mixed with older python version.
This: Requirement already satisfied: setuptools>=25 in /usr/lib/python2.7/dist-packages (from python-rocksdb) (39.0.1)
iFA88
commented
3 years ago You need also activate your virtual python environment to your terminal:
source /mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/bin/activate
After this do the command again:
python -c "import sys; print(sys.version_info);print('\n'.join(sys.path))"
rica01
commented
3 years ago the venv is already activated:
16:18:27 || ~/sepsis/rocksdb/build
[ricardo@bart]$ python -c "import sys; print(sys.version_info);print('\n'.join(sys.path))"
sys.version_info(major=3, minor=6, micro=9, releaselevel='final', serial=0)
/mnt/compgen/inhouse/lib/python2.7/site-packages/VaPoR-0.0.1-py2.7-linux-x86_64.egg
/mnt/compgen/inhouse/lib/python2.7/site-packages/svtyper-0.7.0-py2.7.egg
/mnt/compgen/inhouse/lib/python2.7/site-packages/cytoolz-0.9.0.1-py2.7-linux-x86_64.egg
/mnt/compgen/inhouse/lib/python2.7/site-packages/toolz-0.9.0-py2.7.egg
/usr/lib/python2.7/dist-packages
/mnt/compgen/inhouse/lib/python2.7/site-packages
/usr/lib/python36.zip
/usr/lib/python3.6
/usr/lib/python3.6/lib-dynload
/mnt/compgen/homes/ricardo/sepsis/sepsis_py_venv/lib/python3.6/site-packagesPaths are definitely wrong. Maybe you should simple do what i recommended.. download latest python and make altinstall it.
rica01
commented
3 years ago i cant do that =(
On Thu, Aug 12, 2021 at 4:23 PM iFA @.***> wrote:
Paths are definitely wrong. Maybe you should simple do what i recommended.. download latest python and make altinstall it.
— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/twmht/python-rocksdb/issues/96#issuecomment-897636487, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACWQWE7WLAXNDAUY7KXX6H3T4PDN3ANCNFSM5BVT2VCA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&utm_campaign=notification-email .
iFA88
commented
3 years ago Sadly i can not help you, and this issue is not relevant for python-rocksdb library. Please close this issue and try to google for some solution for your issue. Thank you!
rica01
commented
3 years ago Just wanted to thank you again.
I found the culprint in the PYTHONPATH variable, set systemwide on the bash scripts... After disabling it:
17:00:14 || ~/sepsis/rocksdb
[ricardo@bart]$ pip install python-rocksdb --force-reinstall
Collecting python-rocksdb
Using cached python-rocksdb-0.7.0.tar.gz (219 kB)
Collecting setuptools>=25
Using cached setuptools-57.4.0-py3-none-any.whl (819 kB)
Building wheels for collected packages: python-rocksdb
Building wheel for python-rocksdb (setup.py) ... done
Created wheel for python-rocksdb: filename=python_rocksdb-0.7.0-cp36-cp36m-linux_x86_64.whl size=1501662 sha256=b5489ec78519ededd4d1f2b55799e975e7959a6e82b5f3b0d1e5d2f4addeb835
Stored in directory: /mnt/compgen/homes/ricardo/.cache/pip/wheels/5a/95/15/7fd89efbd81e03bc34f1cd656bb3599642632e0049c4895a4d
Successfully built python-rocksdb
Installing collected packages: setuptools, python-rocksdb
Attempting uninstall: setuptools
Found existing installation: setuptools 57.4.0
Uninstalling setuptools-57.4.0:
Successfully uninstalled setuptools-57.4.0
Successfully installed python-rocksdb-0.7.0 setuptools-57.4.0
(sepsis_py_venv) (base)
Great! :)
exzhawk
commented
2 years ago I encountered the same error today. It is a Ubuntu 18.04.2 LTS with Python 3.6.9. Updating Cython from 0.26.1 to 0.29.32 solved it. Maybe set a higher Cython version requirement in the setup.py file?
Hello friends.
Im trying to install this on a ubuntu with python 3.6.9. I managed to install rocks but while doing the pip installation of python-rocksdb, I hit several errors of this type:
any ideas on how to fix that?
-Ricardo