Closed jts closed 2 years ago
@jts Please ignore the previous response. Originally we made the reference argument optional for both Pacbio and ONT. After adding this function for resolving the homopolymer issues of ONT, we forgot the reference should be now mandatory in ONT mode. We will be pushing a major update later. The new version will make the reference a mandatory argument. Thanks for reporting this issue. --Yao-Ting
Thank you!
The issue was solved in v1.3.
Hi,
I was trying out longphase today, and was consistently getting this error:
I had a quick look in gdb and the error occurs in the filterSNP step:
the
homopolymerLength
function appears to use the reference sequence which is an optional parameter. It would be good to inform the user that the reference is required when the--ont
flag is set.Thanks!