Closed yekaizhou closed 2 years ago
Hi, can you create a clean virtual env (e.g., conda env) for installation? We can't reproduce the error but suspect this might be due to automatic search of libdeflate during htslib configuration (see below). It would be better if you could confirm any previous installation of libdefalte.
--with-libdeflate
Libdeflate is a heavily optimized library for DEFLATE-based compression
and decompression. It also includes a fast crc32 implementation.
By default, ./configure will probe for libdeflate and use it if
available. To prevent this, use --without-libdeflate.
I have the same issue, solved by setting the environment variable. export LD_LIBRARY_PATH=" your libdeflate path containing the file libdeflate.so.0" I wonder this is caused by makefile
Hi @mailmrcai
Thank you for your testing. I have some questions to ask here.
Thanks JH
the installation is running smoothly but jumped out this issue when running longphase.