Open ChannieJ opened 2 years ago
Hi @ChannieJ , Please help me check
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##contig=<ID=2,length=243199373>
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1 13896 . C A 4.1 PASS . GT:GQ:DP:AD:VAF:C:PS 1|0:4:14:5:0.357143:DV:13896
1 15118 . A G 10.1 PASS . GT:GQ:DP:AD:VAF:C:PS 0|1:6:14:9:0.642857:DV:13896
1 15820 . G T 5.4 PASS . GT:GQ:DP:AD:VAF:C:PS 1|0:5:15:7:0.466667:DV:13896
thanks
filter mapping quality below: 20 percentage threshold: 0.6 tag supplementary: false
parsing SNP VCF ... 26s tag read start ... tag read 0s
total process time: 26s total alignment: 0 total supplementary: 0 total secondary: 0 total unmapped: 0 total tag alignment: 0 total untagged: 0
I don't know how to solve this problem?