Open agolicz opened 1 year ago
Hi @agolicz, Yes. the read IDs carrying SVs are essential during co-phasing SNPs/SVs. I am afraid you have to recall the SVs. Otherwise, the program can't partition reads into SV- and non-SV groups properly. --Yao-Ting
Hi, We have some older SVs generated by cuteSV but without the --report_readid. The old mappings no longer exist. We would like to phase using a different set of mappings. Is the absence of --report_readid likely to affect the results? Best, Agnieszka