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twolinin / longphase

GNU General Public License v3.0
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writeResult ... Segmentation fault (core dumped) #3

Closed yekaizhou closed 2 years ago

yekaizhou commented 2 years ago

Hi,

The parsing of chrom/contigs can perform normally, but when entering the stage of writing results, it will bump out segmentation fault.

I am using an HG001 8X ONT alignment file, along with the corresponding cuteSV and Clair3 called VCF files as the input of LongPhase.

twolinin commented 2 years ago

Hi, Can you provide the commands and files you use? Thanks.

yekaizhou commented 2 years ago

it turned out that the expected input vcf should not be compressed. thanks a lot.

cjw85 commented 2 years ago

@twolinin I ran in to the same issue, it would be a nice feature to allow the input file to be a gzipped compressed VCF.

ythuang0522 commented 2 years ago

@cjw85 Agreed. We will push a new version supporting gz VCF.

ythuang0522 commented 2 years ago

The gzipped VCF is now supported. Please download the latest version tomorrow (our server is under maintanence now). We shall move it to Github version release later.

cjw85 commented 2 years ago

Thanks @ythuang0522, I'll check it out.