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twolinin / longphase

GNU General Public License v3.0
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Add jemalloc #44

Closed sloth-eat-pudding closed 6 months ago

sloth-eat-pudding commented 6 months ago

Changes

Included jemalloc as a dependency in the build configuration.

Testing

This test compares the run times with the develop branch (commit https://github.com/twolinin/longphase/commit/1cd0c68d9f664beb65e9faa3094cb20090e28907), performing modcall at ont HG002 60x. The time format is mm:ss.

count thread (chr*bam parsing) Run Time Before Optimization Maximum Memory Before Optimization (GB) Run Time After Optimization Maximum Memory After Optimization (GB)
28 (7*4) 08:02.8 117.7 05:42.8 101.2
32 (8*4) 08:17.0 129.3 05:24.6 103.6
36 (9*4) 07:32.8 141.4 04:16.3 109.8
40 (10*4) 07:33.6 149.8 04:17.2 117.7
44 (11*4) 08:08.8 160.5 03:52.3 124.9
48 (12*4) 07:47.2 171.6 03:51.9 135.1
52 (13*4) 07:45.7 176.1 03:35.8 139.0
56 (14*4) 07:30.0 192.7 03:34.5 143.1
60 (15*4) 08:30.4 196.6 03:43.6 149.7
64 (16*4) 07:58.5 207.0 03:40.0 155.5
68 (17*4) 08:16.8 212.5 03:38.9 158.4
72 (18*4) 08:52.5 221.9 03:44.7 163.4
76 (19*4) 09:16.1 227.2 03:50.8 166.3