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twolinin
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longphase
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haplotag supports phased indels and modification VCF.
#48
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twolinin
closed
6 months ago
twolinin
commented
6 months ago
Changes
When utilizing
haplotag
for read haplotype tagging, it will automatically detect whether the phased SNP file includes phased indels.
When performing read haplotype tagging with
haplotag
, it can use the
--mod-file
option to input the phased modification VCF.
Correcting the condition in ParsingBam.cpp for determining when a deletion variant that fall within the read's deletion cigar.
Changes
haplotagfor read haplotype tagging, it will automatically detect whether the phased SNP file includes phased indels.haplotag, it can use the--mod-fileoption to input the phased modification VCF.