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twolinin / longphase

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Filtering alignments of the same read if there's an overlap ratio greater than the threshold #70

Closed twolinin closed 2 months ago

twolinin commented 2 months ago
  1. Haplotag offers the option --cram to output CRAM format. By default, it outputs BAM format.
  2. Filtering different alignments of the same read if there's an overlap ratio greater than the threshold.
  3. Correcting the bug where a few alignments are mistakenly deleted as another alignment during the removal process when using the iterator store for the alignments to be removed.