Does longphase support SNVs from illumina/short-reads

twolinin / longphase

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Does longphase support SNVs from illumina/short-reads #88

Open eesiribloom opened 2 months ago

eesiribloom commented 2 months ago

Given the higher accuracy of illumina short-read SNV/ indel calls compared to ONT long-reads, does longphase support phasing with short-read SNVs and long-read alignments/BAMs?

ythuang0522 commented 2 months ago

Hi @eesiribloom The variant calling (e.g., VCF from Illumina) can differ from the phasing (e.g., BAM from ONT), as long as both are using the same reference genome.