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twopin / CAMP

predicting peptide-protein interactions
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step1_pdb_process #13

Closed liuzhelz closed 2 years ago

liuzhelz commented 2 years ago

Anyone can help with the step1_pdb_process.py -> step 2. Get fasta sequence of the predicted interacting chains

df_predict_det1 =df_predict_det1.drop(['PDB_id_x','chain_x','PDB_id_y','chain_y'],axis =1)

  1. What are the 'PDB_id_x', 'chain_x'?

df_predict_det1.columns = ['pdb_id','pep_chain','predicted_chain','pep_seq','prot_seq']

  1. I think that 'pep_seq' comes from 'PDB_seq' of pdbid_all_fasta, but how to get 'prot_seq'?