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twopin / CAMP

predicting peptide-protein interactions
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demo data: example output files #19

Closed dlemas closed 2 years ago

dlemas commented 2 years ago

We have worked to get CAMP running on our local cluster, and I have successfully run predict_CAMP.py on the example_data.csv. This produced 3 npy files and I could not find documentation explaining the output and interpretation of results. @twopin-can you push the example data output files to the repo and provide more documentation on how to interpret the CAMP output?

twopin commented 2 years ago

Actually the predicted interacting score is stored in 'pred_label', and the corresponding encoded AA sequences can be found in ‘pep_sequence’ and 'prot_sequence'.

dlemas commented 2 years ago

Where are these files located? I am specifically referring to files located in: ~/CAMP/example_prediction/