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twopin / CAMP

predicting peptide-protein interactions
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dataset #29

Open EityXiao opened 1 year ago

EityXiao commented 1 year ago

Hello. I produce the train data from RCSB PDB recently. And I get 7604 samples(6701 proteins, 6341 peptides) and get a low performance on AUROC and AUPRC. It is inconsistent with the data in your paper, can you please share the data in RCSB?

twopin commented 1 year ago

Sure. My email is twopinlei@hotmail.com you can contact me via email and we can examine together. Actually, some of my classmate already reproduce the results in the paper. So I think it is weired.

twopin commented 1 year ago

Also I attached the RCSB training data(train_PDB_data_pos) on github now. I'm really curious why your result is inconsistent with mine and I'm looking forward to investigate the detailed reason. PLEASE provide more information about your results. We can directly discuss here or through emails.