Where is the directory './peptide_results'?

twopin / CAMP

predicting peptide-protein interactions

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Where is the directory './peptide_results'? #4

Closed liang98 closed 3 years ago

liang98 commented 3 years ago

Hi, when I try to run step1_pdb_process, I can't find the directory './peptide_results'. Could you tell me how to find it?

twopin commented 3 years ago

Hi, First you need to use PLIP (https://github.com/pharmai/plip) to analyze the complex structures (step 0) to obtain the binding residue labels. You need to place the PLIP results in a folder named 'peptide_results' and then run the codes in step1.

twopin commented 3 years ago

I also notice that PLIP has an updated version, which you can obtain the analyzed results of published PDB complexes in seconds.