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twosigma / beakerx

Beaker Extensions for Jupyter Notebook
http://BeakerX.com
Apache License 2.0
2.8k stars 381 forks source link

Beakerx not compatible with tensorflow #6715

Closed eyadsibai closed 6 years ago

eyadsibai commented 6 years ago

getting the following error when I run: conda install beakerx

LinkError: post-link script failed for package conda-forge::beakerx-0.11.1-py36_1
running your command again with `-v` will provide additional information
location of failed script: /opt/conda/bin/.beakerx-post-link.sh
==> script messages <==
+ /opt/conda/bin/beakerx-install
Traceback (most recent call last):
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2920, in _dep_map
    return self.__dep_map
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2731, in __getattr__
    raise AttributeError(attr)
AttributeError: _DistInfoDistribution__dep_map

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2911, in _parsed_pkg_info
    return self._pkg_info
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2731, in __getattr__
    raise AttributeError(attr)
AttributeError: _pkg_info

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/opt/conda/bin/beakerx-install", line 6, in <module>
    from pkg_resources import load_entry_point
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3142, in <module>
    @_call_aside
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3126, in _call_aside
    f(*args, **kwargs)
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3155, in _initialize_master_working_set
    working_set = WorkingSet._build_master()
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 664, in _build_master
    ws.require(__requires__)
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 981, in require
    needed = self.resolve(parse_requirements(requirements))
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 875, in resolve
    new_requirements = dist.requires(req.extras)[::-1]
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2675, in requires
    dm = self._dep_map
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2922, in _dep_map
    self.__dep_map = self._compute_dependencies()
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2931, in _compute_dependencies
    for req in self._parsed_pkg_info.get_all('Requires-Dist') or []:
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2913, in _parsed_pkg_info
    metadata = self.get_metadata(self.PKG_INFO)
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1486, in get_metadata
    value = self._get(self._fn(self.egg_info, name))
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1595, in _get
    with open(path, 'rb') as stream:
FileNotFoundError: [Errno 2] No such file or directory: '/opt/conda/lib/python3.6/site-packages/bleach-2.0.0.dist-info/METADATA'
scottdraves commented 6 years ago

looks like your conda env is corrupt. try rebuilding it.

eyadsibai commented 6 years ago

not really I have been trying this several times! same issue.

scottdraves commented 6 years ago

can you show the whole log from "conda create" through the error? what OS are you on?

eyadsibai commented 6 years ago

I am running ubuntu 16.04 on docker image

scottdraves commented 6 years ago

can you show the whole log, starting with creating the conda env? you might try installing with pip and then running "beakerx-install" yourself. in the stack trace you posted, there is no beakerx code running.

scottdraves commented 6 years ago

here's a log of it installing on ubuntu and docker, without error: https://gist.github.com/scottdraves/61a6c9ada25b7e7b4f4e1de8f4aa5bba

eyadsibai commented 6 years ago

this is the whole log

Step 1/42 : FROM jupyter/all-spark-notebook:latest
 ---> fe0321ba093f
Step 2/42 : USER root
 ---> Using cache
 ---> dde100465198
Step 3/42 : RUN DEBIAN_FRONTEND=noninteractive apt-get -qq update && apt-get -qq install -y --no-install-recommends git libav-tools cmake build-essential liblapacke-dev libboost-program-options-dev zlib1g-dev libhunspell-dev && apt-get -qq autoremove -y && apt-get -qq clean     && rm -rf /var/lib/apt/lists/*
 ---> Using cache
 ---> 5b1df16edd41
Step 4/42 : USER $NB_USER
 ---> Using cache
 ---> a6cc9fccd4bd
Step 5/42 : RUN conda config --set channel_priority false
 ---> Using cache
 ---> a73dead46b70
Step 6/42 : COPY files/environment.default.yaml environment.yaml
 ---> ed813e530106
Step 7/42 : RUN conda env update --file=environment.yaml     && conda remove qt pyqt --quiet --yes --force     && conda clean -tipsy && rm -rf "$HOME/.cache/pip/*" && rm environment.yaml && npm cache clean --force &&     rm -rf $CONDA_DIR/share/jupyter/lab/staging
 ---> Running in 1e7fc3cb57d6
Fetching package metadata .............................................
Solving package specifications: .
Warning: 2 possible package resolutions (only showing differing packages):
  - conda-forge::category_encoders-1.2.5-py36_0
  - conda-forge::category_encoders-1.2.5-py_0
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r-irkernel-0.8 100% |###############################| Time: 0:00:00 528.70 kB/s
r-knitr-1.17-r 100% |###############################| Time: 0:00:02 340.11 kB/s
r-lava-1.5.1-r 100% |###############################| Time: 0:00:03 628.41 kB/s
r-lme4-1.1_14- 100% |###############################| Time: 0:00:04 965.43 kB/s
r-readxl-1.0.0 100% |###############################| Time: 0:00:00 830.51 kB/s
r-recommended- 100% |###############################| Time: 0:00:00   1.60 MB/s
r-rocr-1.0_7-r 100% |###############################| Time: 0:00:00 257.49 kB/s
r-rsqlite-2.0- 100% |###############################| Time: 0:00:03 295.73 kB/s
r-rvest-0.3.2- 100% |###############################| Time: 0:00:01 581.16 kB/s
r-tidyselect-0 100% |###############################| Time: 0:00:00 204.63 kB/s
r-ttr-0.23_2-r 100% |###############################| Time: 0:00:02 209.76 kB/s
requests-oauth 100% |###############################| Time: 0:00:00   9.34 MB/s
serverfiles-0. 100% |###############################| Time: 0:00:00   6.34 MB/s
skater-1.0.2-p 100% |###############################| Time: 0:00:00 184.30 kB/s
smart_open-1.5 100% |###############################| Time: 0:00:00 157.86 kB/s
spacy-2.0.5-py 100% |###############################| Time: 0:00:00  39.50 MB/s
spotlight-0.1. 100% |###############################| Time: 0:00:00 177.97 kB/s
tsfresh-0.10.1 100% |###############################| Time: 0:00:03 321.97 kB/s
update_checker 100% |###############################| Time: 0:00:00  10.03 MB/s
gensim-3.2.0-p 100% |###############################| Time: 0:00:09   1.63 MB/s
google-cloud-c 100% |###############################| Time: 0:00:00  10.91 MB/s
orange3-3.9.0- 100% |###############################| Time: 0:00:05   1.11 MB/s
r-dimred-0.1.0 100% |###############################| Time: 0:00:00   1.06 MB/s
r-prodlim-1.6. 100% |###############################| Time: 0:00:00 607.32 kB/s
r-quantmod-0.4 100% |###############################| Time: 0:00:01 355.17 kB/s
r-rmarkdown-1. 100% |###############################| Time: 0:00:04 465.07 kB/s
r-rstan-2.16.2 100% |###############################| Time: 0:00:01   1.22 MB/s
r-tidyr-0.7.1- 100% |###############################| Time: 0:00:00   1.56 MB/s
rpy2-2.9.0-py3 100% |###############################| Time: 0:00:00   1.10 MB/s
tpot-0.9.2-py_ 100% |###############################| Time: 0:00:00  14.67 MB/s
twython-3.6.0- 100% |###############################| Time: 0:00:00  11.82 MB/s
vega-0.4.4-py3 100% |###############################| Time: 0:00:01 512.40 kB/s
altair-1.2.1-p 100% |###############################| Time: 0:00:00 358.31 kB/s
ipywidgets-7.1 100% |###############################| Time: 0:00:00 207.20 kB/s
nltk-3.2.5-py_ 100% |###############################| Time: 0:00:03 331.10 kB/s
r-broom-0.4.2- 100% |###############################| Time: 0:00:03 534.07 kB/s
r-gistr-0.4.0- 100% |###############################| Time: 0:00:02 682.03 kB/s
r-ipred-0.9_6- 100% |###############################| Time: 0:00:00   1.18 MB/s
r-tseries-0.10 100% |###############################| Time: 0:00:00 795.80 kB/s
bqplot-0.10.2- 100% |###############################| Time: 0:00:02 499.47 kB/s
folium-0.5.0-p 100% |###############################| Time: 0:00:00 380.43 kB/s
ipyleaflet-0.5 100% |###############################| Time: 0:00:01 309.63 kB/s
jupyter-1.0.0- 100% |###############################| Time: 0:00:00   2.02 MB/s
paramnb-2.0.2- 100% |###############################| Time: 0:00:00 208.45 kB/s
qgrid-1.0.0-py 100% |###############################| Time: 0:00:03 334.32 kB/s
r-forecast-8.2 100% |###############################| Time: 0:00:03 488.33 kB/s
r-modelr-0.1.1 100% |###############################| Time: 0:00:00 568.14 kB/s
r-rbokeh-0.5.0 100% |###############################| Time: 0:00:03 408.92 kB/s
r-recipes-0.1. 100% |###############################| Time: 0:00:01 568.99 kB/s
r-sparklyr-0.6 100% |###############################| Time: 0:00:02 489.17 kB/s
beakerx-0.11.1 100% |###############################| Time: 0:00:21   4.95 MB/s
holoviews-1.9. 100% |###############################| Time: 0:00:01   6.91 MB/s
hyperspy-1.3-p 100% |###############################| Time: 0:00:05   4.93 MB/s
r-caret-6.0_77 100% |###############################| Time: 0:00:01   3.68 MB/s
r-tidyverse-1. 100% |###############################| Time: 0:00:00  14.60 MB/s
r-anomalydetec 100% |###############################| Time: 0:00:00   1.31 MB/s
r-essentials-1 100% |###############################| Time: 0:00:00   4.39 MB/s
Installing /opt/conda/lib/python3.6/site-packages/vega/static -> jupyter-vega
Making directory: /opt/conda/share/jupyter/nbextensions/jupyter-vega/
Copying: /opt/conda/lib/python3.6/site-packages/vega/static/vega.html -> /opt/conda/share/jupyter/nbextensions/jupyter-vega/vega.html
Copying: /opt/conda/lib/python3.6/site-packages/vega/static/index.js -> /opt/conda/share/jupyter/nbextensions/jupyter-vega/index.js
Copying: /opt/conda/lib/python3.6/site-packages/vega/static/index.js.map -> /opt/conda/share/jupyter/nbextensions/jupyter-vega/index.js.map
Copying: /opt/conda/lib/python3.6/site-packages/vega/static/vega-lite.html -> /opt/conda/share/jupyter/nbextensions/jupyter-vega/vega-lite.html
Copying: /opt/conda/lib/python3.6/site-packages/vega/static/vega.js -> /opt/conda/share/jupyter/nbextensions/jupyter-vega/vega.js
- Validating: OK

    To initialize this nbextension in the browser every time the notebook (or other app) loads:

          jupyter nbextension enable vega --py --sys-prefix

Enabling notebook extension bqplot/extension...
      - Validating: OK

+ /opt/conda/bin/beakerx-install
Traceback (most recent call last):
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2920, in _dep_map
    return self.__dep_map
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2731, in __getattr__
    raise AttributeError(attr)
AttributeError: _DistInfoDistribution__dep_map

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2911, in _parsed_pkg_info
    return self._pkg_info
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2731, in __getattr__
    raise AttributeError(attr)
AttributeError: _pkg_info

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/opt/conda/bin/beakerx-install", line 6, in <module>
    from pkg_resources import load_entry_point
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3142, in <module>
    @_call_aside
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3126, in _call_aside
    f(*args, **kwargs)
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3155, in _initialize_master_working_set
    working_set = WorkingSet._build_master()
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 664, in _build_master
    ws.require(__requires__)
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 981, in require
    needed = self.resolve(parse_requirements(requirements))
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 875, in resolve
    new_requirements = dist.requires(req.extras)[::-1]
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2675, in requires
    dm = self._dep_map
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2922, in _dep_map
    self.__dep_map = self._compute_dependencies()
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2931, in _compute_dependencies
    for req in self._parsed_pkg_info.get_all('Requires-Dist') or []:
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2913, in _parsed_pkg_info
    metadata = self.get_metadata(self.PKG_INFO)
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1486, in get_metadata
    value = self._get(self._fn(self.egg_info, name))
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1595, in _get
    with open(path, 'rb') as stream:
FileNotFoundError: [Errno 2] No such file or directory: '/opt/conda/lib/python3.6/site-packages/bleach-2.0.0.dist-info/METADATA'
ERROR conda.core.link:_execute_actions(337): An error occurred while installing package 'conda-forge::beakerx-0.11.1-py36_1'.
LinkError: post-link script failed for package conda-forge::beakerx-0.11.1-py36_1
running your command again with `-v` will provide additional information
location of failed script: /opt/conda/bin/.beakerx-post-link.sh
==> script messages <==
+ /opt/conda/bin/beakerx-install
Traceback (most recent call last):
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2920, in _dep_map
    return self.__dep_map
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2731, in __getattr__
    raise AttributeError(attr)
AttributeError: _DistInfoDistribution__dep_map

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2911, in _parsed_pkg_info
    return self._pkg_info
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2731, in __getattr__
    raise AttributeError(attr)
AttributeError: _pkg_info

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/opt/conda/bin/beakerx-install", line 6, in <module>
    from pkg_resources import load_entry_point
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3142, in <module>
    @_call_aside
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3126, in _call_aside
    f(*args, **kwargs)
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3155, in _initialize_master_working_set
    working_set = WorkingSet._build_master()
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 664, in _build_master
    ws.require(__requires__)
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 981, in require
    needed = self.resolve(parse_requirements(requirements))
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 875, in resolve
    new_requirements = dist.requires(req.extras)[::-1]
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2675, in requires
    dm = self._dep_map
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2922, in _dep_map
    self.__dep_map = self._compute_dependencies()
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2931, in _compute_dependencies
    for req in self._parsed_pkg_info.get_all('Requires-Dist') or []:
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2913, in _parsed_pkg_info
    metadata = self.get_metadata(self.PKG_INFO)
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1486, in get_metadata
    value = self._get(self._fn(self.egg_info, name))
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1595, in _get
    with open(path, 'rb') as stream:
FileNotFoundError: [Errno 2] No such file or directory: '/opt/conda/lib/python3.6/site-packages/bleach-2.0.0.dist-info/METADATA'

Attempting to roll back.

LinkError: post-link script failed for package conda-forge::beakerx-0.11.1-py36_1
running your command again with `-v` will provide additional information
location of failed script: /opt/conda/bin/.beakerx-post-link.sh
==> script messages <==
+ /opt/conda/bin/beakerx-install
Traceback (most recent call last):
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2920, in _dep_map
    return self.__dep_map
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2731, in __getattr__
    raise AttributeError(attr)
AttributeError: _DistInfoDistribution__dep_map

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2911, in _parsed_pkg_info
    return self._pkg_info
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2731, in __getattr__
    raise AttributeError(attr)
AttributeError: _pkg_info

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/opt/conda/bin/beakerx-install", line 6, in <module>
    from pkg_resources import load_entry_point
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3142, in <module>
    @_call_aside
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3126, in _call_aside
    f(*args, **kwargs)
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3155, in _initialize_master_working_set
    working_set = WorkingSet._build_master()
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 664, in _build_master
    ws.require(__requires__)
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 981, in require
    needed = self.resolve(parse_requirements(requirements))
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 875, in resolve
    new_requirements = dist.requires(req.extras)[::-1]
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2675, in requires
    dm = self._dep_map
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2922, in _dep_map
    self.__dep_map = self._compute_dependencies()
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2931, in _compute_dependencies
    for req in self._parsed_pkg_info.get_all('Requires-Dist') or []:
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2913, in _parsed_pkg_info
    metadata = self.get_metadata(self.PKG_INFO)
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1486, in get_metadata
    value = self._get(self._fn(self.egg_info, name))
  File "/opt/conda/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1595, in _get
    with open(path, 'rb') as stream:
FileNotFoundError: [Errno 2] No such file or directory: '/opt/conda/lib/python3.6/site-packages/bleach-2.0.0.dist-info/METADATA'
scottdraves commented 6 years ago

Thanks, I don't see any obvious problems there. If you post the Dockerfile you are using I would be happy to see if I can reproduce it myself.

jmsdnns commented 6 years ago

The log shows bleach 1.5 is installed, but the error looks specifically for bleach 2.0. Bleach is currently on version 2.1.2.

The first line of the log says FROM jupyter/all-spark-notebook, meaning we don't publish the Dockerfile being used here. This is the repo: https://github.com/jupyter/docker-stacks/blob/master/all-spark-notebook as indicated by https://hub.docker.com/r/jupyter/all-spark-notebook/

This issue most likely belongs to them and not BeakerX.

eyadsibai commented 6 years ago

but the thing if I remove beakerx it works fine! the issue only occurs when I add beakerx to the conda environment.yaml

jmsdnns commented 6 years ago

That makes sense, as beakerx has different dependencies from the environment you're building.

I'm curious what would happen if you first built the environment, then upgraded bleach to > 2.0, then installed BeakerX.

eyadsibai commented 6 years ago

I will try that! but if you are dependent on bleach why don't you have added bleach as a dependency with the right version? in your conda build

scottdraves commented 6 years ago

We do not use bleach but it's used by jupyter in general (https://github.com/conda-forge/nbconvert-feedstock/blob/master/recipe/meta.yaml#L24). I am guessing the problem has something to do with crossed wires between regular conda and the conda-forge channel. If you can post your Dockerfile and environment.default.yaml and anything else needed for us to reproduce this problem, I would be happy to continue to look into it.

jmsdnns commented 6 years ago

The bleach dependency doesn't come from BeakerX. It comes from Jupyter. It might be possible for us to specify "bleach>2.0", but we have not come across this issue until now, so we didn't know it wasn't handled properly by Jupyter.

The reason you're experiencing it when you run beakerx-install is almost certainly because that command issues jupyter commands to install plugins, which certainly makes it misleading as to where the issue is coming from. Sorry about that.

Would you be willing to post your Dockerfile and environment.yml so we could try reproducing? It would be great if we can work together to create a meaningful issue description and also discover the right place to post it. This will also let us test whether or not beakerx can require "bleach>2.0" and override whatever happened causing 1.5 to be installed.

jmsdnns commented 6 years ago

I guess I was typing almost the same message as @scottdraves and didn't notice. :)

eyadsibai commented 6 years ago

Sure! I will post the Dockerfile and the environment.yaml. I am trying now to build it by specifying bleach version and will update you

eyadsibai commented 6 years ago

I found the issue actually. tensorflow ==1.3.0 requires bleach 1.5.0 I am going to upgrade it to 1.4.0

jmsdnns commented 6 years ago

Hmm, I'm not sure... Your original log output says tensorflow 1.4 would be installed.

tensorflow-1.4 100% |###############################| Time: 0:00:00   2.36 MB/s

I took a look at your github profile to see if perhaps there's a repo that could fit the description of your project, so I'm speculating here, but this lists tensorflow>=1.3, which makes sense with your install log showing 1.4.

https://github.com/eyadsibai/machine-learning-docker-image/blob/master/files/environment.default.yaml#L299

From there, I dug further and looked into TensorFlow and found that the master branch explicitly installs bleach 1.5, so 1.5 is a requirement of tensorflow 1.3, 1.4, and the coming 1.5.

That's a real drag to discover...

jmsdnns commented 6 years ago

Forgot the Tensorflow link.

https://github.com/tensorflow/tensorflow/blob/master/tensorflow/tools/ci_build/install/install_pip_packages.sh#L45

jmsdnns commented 6 years ago

I posted an issue on the tensorflow github to track this. I have no idea what to expect in terms of whether or not they move quickly on it or if upgrading would affect their project, but at least we have a place for discussion.

https://github.com/tensorflow/tensorflow/issues/16424

eyadsibai commented 6 years ago

shall we close this?

jmsdnns commented 6 years ago

Might as well, since tensorflow addressed it.