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twsaari / FeatureSequence

JBrowse plugin to view the sequence of features
GNU General Public License v3.0
7 stars 3 forks source link

Not suitable for GFF3Tabix #9

Closed billzt closed 5 years ago

billzt commented 7 years ago

JBrowse 1.12.3 has been released and now it supports GFF3Tabix as features. However this plugin seems not usable if we load GFF3Tabix as the features store

twsaari commented 7 years ago

I have not used GFF3 Tabix, so I'm not too familiar. It is probably due to Issue #780 of JBrowse noting the limitations of GFF3Tabix at this time. This plugin also needs complete information about exons in order to work properly.

cmdcolin commented 5 years ago

Recent versions of JBrowse should have complete information about genes with the #780 concerns being fixed :)

FredericBGA commented 5 years ago

Using JBrowse 1.16.4 we can't make this plugin working with GFF3Tabix features. It works well on NCList features. I can see that in web console:

TypeError: "e.store.args is undefined"