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txWang / BERMUDA

BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.
MIT License
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The data are missing #3

Closed yzcv closed 4 years ago

yzcv commented 5 years ago

Hi,

I am quite attracted by your BERMUDA work, but I have a problem in running the "pre_processing.R" in the BERMUDA/R folder. I am wondering if you could provide the two datasets, namely "muraro_human.csv" and "baron_human.csv", which are required in the code "pre_processing.R". Thank you in advance.

txWang commented 4 years ago

Hi, Sorry about that. However, the original data were too large to put here at Github. You could download the data from Gene Expression Omnibus (GSE85241 for Muraro and GSE84133 for Baron). Thank you.