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txWang / BERMUDA

BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.
MIT License
26 stars 7 forks source link

Scanpy integration #7

Open jeffhsu3 opened 4 years ago

jeffhsu3 commented 4 years ago

Would be useful if this was integrated into https://github.com/theislab/scanpy. One thing that would need to be done is a python version of MetaNeighbor.