Update to version 2.0

[csgillespie]

No changes implemented regarding https://github.com/mkborregaard/gambin/issues/4

[mkborregaard]

Awesome – well done! And I know that I have been asking for this – but I am going on holiday today and will probably only be able to look this over in the New Year :-( —

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Michael Krabbe Borregaard, MSc, PhD Assistant Professor (TT), Center for Macroecology, Evolution & Climate Natural History Museum of Denmark, University of Copenhagen Universitetsparken 15, DK-2100 Copenhagen

Subject Editor, Ecography Associate Editor, Global Ecology and Biogeography

Featured paper: Oceanic island biogeography through the lens of the general dynamic model: assessment and prospecthttp://onlinelibrary.wiley.com/doi/10.1111/brv.12256/full, Biological Reviews (2016). An Anthropocene map of genetic diversityhttp://science.sciencemag.org/content/353/6307/1532, Science (2016)

Fra: Colin Gillespie notifications@github.com<mailto:notifications@github.com> Svar til: mkborregaard/gambin reply@reply.github.com<mailto:reply@reply.github.com> Dato: onsdag den 21. december 2016 kl. 12.48 Til: mkborregaard/gambin gambin@noreply.github.com<mailto:gambin@noreply.github.com> Cc: Subscribed subscribed@noreply.github.com<mailto:subscribed@noreply.github.com> Emne: [mkborregaard/gambin] Update to version 2.0 (#5)

No changes implemented regarding #4https://github.com/mkborregaard/gambin/issues/4

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You can view, comment on, or merge this pull request online at:

https://github.com/mkborregaard/gambin/pull/5

Commit Summary

• Switch to Rmd for README
• Update ignore.
• Bump version
• Moved over to roxygen2
• Update dgambin to match standard d* functions
• Add p/q/r gambin function
• Add NEWS file
• Remove non-standard dots for function names.
• Changed odd if statement
• Removed nesting from if statements
• Code spacing
• Update to use new dgambin function
• Minor docs
• Simplify code
• Empty file
• Change plot to barplot. Add in lines and points
• Missing args
• Formatting
• Typo in travis URL
• Obsolete arguments
• Formatting
• Update authors list with person.
• Bump NAMESPACE.
• Add travis file
• Initial vignette.
• Adding initial testthat
• Adding vignette builder (knitr)
• Ignore travis file when building
• Bump version and NEWS
• Get df.
• Spacing
• Use diff instead of minus
• Switch from gambin2 to gambin.
• Change URLs to mkborregaard

File Changes

• A .Rbuildignorehttps://github.com/mkborregaard/gambin/pull/5/files#diff-0 (5)
• A .gitignorehttps://github.com/mkborregaard/gambin/pull/5/files#diff-1 (4)
• A .travis.ymlhttps://github.com/mkborregaard/gambin/pull/5/files#diff-2 (19)
• M DESCRIPTIONhttps://github.com/mkborregaard/gambin/pull/5/files#diff-3 (30)
• M NAMESPACEhttps://github.com/mkborregaard/gambin/pull/5/files#diff-4 (50)
• A NEWS.mdhttps://github.com/mkborregaard/gambin/pull/5/files#diff-5 (18)
• D R/AIC.gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-6 (7)
• M R/AICc.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-7 (25)
• D R/AICc.gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-8 (11)
• R R/BIC_gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-9 (6)
• D R/confint.gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-10 (6)
• A R/confint_gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-11 (19)
• M R/create_octaves.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-12 (35)
• A R/data_docs.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-13 (8)
• M R/dgambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-14 (131)
• D R/fitGambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-15 (53)
• A R/fit_gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-16 (77)
• D R/gambin-internal.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-17 (33)
• A R/gambin-package.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-18 (32)
• M R/gambin_exp.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-19 (9)
• D R/logLik.gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-20 (5)
• A R/logLik_gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-21 (29)
• R R/nobs_gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-22 (2)
• D R/plot.gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-23 (9)
• A R/plot_gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-24 (28)
• R R/predict_gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-25 (1)
• R R/print_gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-26 (1)
• R R/print_summary_gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-27 (7)
• R R/summary_gambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-28 (1)
• A README.Rmdhttps://github.com/mkborregaard/gambin/pull/5/files#diff-29 (37)
• M README.mdhttps://github.com/mkborregaard/gambin/pull/5/files#diff-30 (28)
• M gambin.Rprojhttps://github.com/mkborregaard/gambin/pull/5/files#diff-31 (1)
• M man/create_octaves.Rdhttps://github.com/mkborregaard/gambin/pull/5/files#diff-32 (39)
• M man/dgambin.Rdhttps://github.com/mkborregaard/gambin/pull/5/files#diff-33 (74)
• M man/fitGambin.Rdhttps://github.com/mkborregaard/gambin/pull/5/files#diff-34 (84)
• M man/gambin-package.Rdhttps://github.com/mkborregaard/gambin/pull/5/files#diff-35 (58)
• M man/logLik.gambin.Rdhttps://github.com/mkborregaard/gambin/pull/5/files#diff-36 (45)
• M man/moths.Rdhttps://github.com/mkborregaard/gambin/pull/5/files#diff-37 (26)
• A tests/testthat.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-38 (2)
• A tests/testthat/testing_dgambin.Rhttps://github.com/mkborregaard/gambin/pull/5/files#diff-39 (8)
• A vignettes/overview.Rmdhttps://github.com/mkborregaard/gambin/pull/5/files#diff-40 (38)
• A vignettes/refs.bibhttps://github.com/mkborregaard/gambin/pull/5/files#diff-41 (22)

Patch Links:

• https://github.com/mkborregaard/gambin/pull/5.patch
• https://github.com/mkborregaard/gambin/pull/5.diff

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[csgillespie]

That's OK; I'm on holiday tomorrow and just wanted to pass the buck ;)

[txm676]

Ok so I've just merged the 2.0 version (hopefully)

[mkborregaard]

Thanks for your amazing work on this, @csgillespie !