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txpo-ontology / TXPO

Repository for the Toxic process ontology, TXPO.
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Normalising NCIT ids to be more interoperable with other OBO ontologies? #2

Closed matentzn closed 1 year ago

matentzn commented 3 years ago

TXPO is using NCIT identifiers such as:

http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Amniotic_Fluid http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Amniotic_Sac http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C103180 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C107150 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C15958 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C21204 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C66829 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Chorionic_Villus http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Embryonic_Fluid http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Gonad http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Iliac_Vein

The usual OBO Ids for these are: http://purl.obolibrary.org/obo/NCIT_C43816

To make OBO ontologies more interoperable, maybe it makes sense to normalise these to the OBO PURLs?

Note that TXPO does not use all the ids above - these are the instances I found across the whole OBO foundry, but some of them come from TXPO.

Context: Our grand OBO wide ID normalisation effort. https://github.com/orgs/OBOFoundry/projects/5

Related: https://github.com/CLO-ontology/CLO/issues/58 https://github.com/GenEpiO/genepio/issues/21

txpo-ontology commented 1 year ago

Hi @matentzn. Sorry, I didn't notice this thread for a long time. Thank you for your suggestions. I revised to normalize these to the OBO PURLs [http://purl.obolibrary.org/obo/NCIT_.

matentzn commented 1 year ago

thanks!