search

tyang816 / ProtSolM

Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).
Apache License 2.0
3 stars 0 forks source link

inference codes #1

Open adrienchaton opened 2 weeks ago

adrienchaton commented 2 weeks ago

@tyang816 thanks for sharing your work, are you planning to release some standalone codes for inference?

For example, having a script that takes a .fasta or a directory with PBD files and predicts corresponding solubility scores would make it easier to run your models and do benchmarks!

tyang816 commented 2 weeks ago

Thanks for your suggestion, I will update the code soon to support inference from a single PDB file or a directory. I will comment again when the code has been committed.

tyang816 commented 1 week ago

@adrienchaton Hi, I have updated the code and README file to make it easier for readers, you can use the ProtSolM for your own dataset. Plz have a try! If you have any other questions, please contact me.

adrienchaton commented 1 week ago

Hi @tyang816 and thank you for pushing these changes! I will try to run predictions asap

tyang816 commented 1 week ago

Thank you for following our work!