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tylermorganwall / rayshader

R Package for 2D and 3D mapping and data visualization
https://www.rayshader.com/
2.05k stars 211 forks source link

Install failure: ERROR: loading failed / Abort trap: 6 #139

Closed geotheory closed 3 years ago

geotheory commented 3 years ago

Struggling to install, having just upgraded to macOS Big Sur 11.0.1 (20B29), R to Freaky Bunnies, and reinstalled gcc, xcode and, command line tools. Here's the log. Any suggestions much appreciated.

> devtools::install_github("tylermorganwall/rayshader")
Downloading GitHub repo tylermorganwall/rayshader@HEAD
✓  checking for file ‘/private/var/folders/_3/b8whcf8d1bb8w_lr2rrscb5m0000gp/T/RtmprrpYG8/remotes119a75641a7b5/tylermorganwall-rayshader-f08ef70/DESCRIPTION’ ...
─  preparing ‘rayshader’:
✓  checking DESCRIPTION meta-information ...
─  cleaning src
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
   Removed empty directory ‘rayshader/tools’
─  building ‘rayshader_0.20.0.tar.gz’

* installing *source* package ‘rayshader’ ...
** using staged installation
** libs
/usr/local/gfortran/bin/g++ -fopenmp -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/progress/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/opt/gettext/include -I/usr/local/opt/llvm/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include   -fPIC  -g -O3 -Wall -pedantic -std=c++11 -mtune=native -pipe -c RcppExports.cpp -o RcppExports.o
/usr/local/gfortran/bin/g++ -fopenmp -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/progress/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/opt/gettext/include -I/usr/local/opt/llvm/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include   -fPIC  -g -O3 -Wall -pedantic -std=c++11 -mtune=native -pipe -c bilineargrid.cpp -o bilineargrid.o
/usr/local/gfortran/bin/g++ -fopenmp -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/progress/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/opt/gettext/include -I/usr/local/opt/llvm/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include   -fPIC  -g -O3 -Wall -pedantic -std=c++11 -mtune=native -pipe -c calculate_normal.cpp -o calculate_normal.o
/usr/local/gfortran/bin/g++ -fopenmp -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/progress/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/opt/gettext/include -I/usr/local/opt/llvm/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include   -fPIC  -g -O3 -Wall -pedantic -std=c++11 -mtune=native -pipe -c construct_matrix.cpp -o construct_matrix.o
/usr/local/gfortran/bin/g++ -fopenmp -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/progress/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/opt/gettext/include -I/usr/local/opt/llvm/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include   -fPIC  -g -O3 -Wall -pedantic -std=c++11 -mtune=native -pipe -c find_groups.cpp -o find_groups.o
/usr/local/gfortran/bin/g++ -fopenmp -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/progress/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/opt/gettext/include -I/usr/local/opt/llvm/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include   -fPIC  -g -O3 -Wall -pedantic -std=c++11 -mtune=native -pipe -c interpolate_color.cpp -o interpolate_color.o
/usr/local/gfortran/bin/g++ -fopenmp -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/progress/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/opt/gettext/include -I/usr/local/opt/llvm/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include   -fPIC  -g -O3 -Wall -pedantic -std=c++11 -mtune=native -pipe -c lambshade.cpp -o lambshade.o
/usr/local/gfortran/bin/g++ -fopenmp -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/progress/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/opt/gettext/include -I/usr/local/opt/llvm/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include   -fPIC  -g -O3 -Wall -pedantic -std=c++11 -mtune=native -pipe -c make_base_cpp.cpp -o make_base_cpp.o
/usr/local/gfortran/bin/g++ -fopenmp -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/progress/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/opt/gettext/include -I/usr/local/opt/llvm/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include   -fPIC  -g -O3 -Wall -pedantic -std=c++11 -mtune=native -pipe -c pointspread.cpp -o pointspread.o
/usr/local/gfortran/bin/g++ -fopenmp -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/progress/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/opt/gettext/include -I/usr/local/opt/llvm/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include   -fPIC  -g -O3 -Wall -pedantic -std=c++11 -mtune=native -pipe -c rayshade.cpp -o rayshade.o
/usr/local/gfortran/bin/g++ -fopenmp -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/progress/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/opt/gettext/include -I/usr/local/opt/llvm/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include   -fPIC  -g -O3 -Wall -pedantic -std=c++11 -mtune=native -pipe -c rayshade_multicore.cpp -o rayshade_multicore.o
/usr/local/gfortran/bin/g++ -fopenmp -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/opt/gettext/lib -L/usr/local/opt/llvm/lib -Wl,-rpath,/usr/local/opt/llvm/lib -o rayshader.so RcppExports.o bilineargrid.o calculate_normal.o construct_matrix.o find_groups.o interpolate_color.o lambshade.o make_base_cpp.o pointspread.o rayshade.o rayshade_multicore.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: dylib (/usr/local/opt/llvm/lib/libunwind.dylib) was built for newer macOS version (11.0) than being linked (10.16)
ld: warning: dylib (/usr/local/opt/llvm/lib/libunwind.dylib) was built for newer macOS version (11.0) than being linked (10.16)
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-rayshader/00new/rayshader/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
sh: line 1: 72729 Abort trap: 6           R_TESTS= '/Library/Frameworks/R.framework/Resources/bin/R' --no-save --no-restore --no-echo 2>&1 < '/var/folders/_3/b8whcf8d1bb8w_lr2rrscb5m0000gp/T//RtmpjPuYx3/file11b937e0be1d5'
ERROR: loading failed
* removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/rayshader’
Error: Failed to install 'rayshader' from GitHub:
  (converted from warning) installation of package ‘/var/folders/_3/b8whcf8d1bb8w_lr2rrscb5m0000gp/T//RtmprrpYG8/file119a770698850/rayshader_0.20.0.tar.gz’ had non-zero exit status
tylermorganwall commented 3 years ago

Closing as this is an rgl issue.

sarnobat commented 2 years ago

If anyone knows a solution to this please share. My version info:

R scripting front-end version 4.1.2 (2021-11-01)

R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin19.6.0 (64-bit)