R session gets aborted as soon as I close the rgl window

zavud commented 3 years ago

I followed this tutorial to produce 3d map of my satellite imagery. Everything worked fine and I could produce a nice 3d plot of my study area. However, there are few issues:

I cannot drag the 3d map. It is just a static 3d map opened in rgl window.
As soon as I close the rgl window I my R session gets aborted and I have to rerun everything.

BTW, I am using the latest version of rayshader installed from github.

The info about the session (after loading the libraries):

> sessionInfo()
R version 4.1.0 (2021-05-18)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19042)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252    LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C                           LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] scales_1.1.1     raster_3.4-13    sp_1.4-5         rayshader_0.25.2

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.6              compiler_4.1.0          later_1.2.0             prettyunits_1.1.1       iterators_1.0.13        tools_4.1.0            
 [7] progress_1.2.2          extrafont_0.17          digest_0.6.27           jsonlite_1.7.2          lifecycle_1.0.0         lattice_0.20-44        
[13] pkgconfig_2.0.3         rlang_0.4.11            foreach_1.5.1           shiny_1.6.0             crosstalk_1.1.1         parallel_4.1.0         
[19] xfun_0.24               fastmap_1.1.0           Rttf2pt1_1.3.8          knitr_1.33              vctrs_0.3.8             htmlwidgets_1.5.3      
[25] hms_1.1.0               manipulateWidget_0.11.0 grid_4.1.0              R6_2.5.0                rgl_0.106.8             extrafontdb_1.0        
[31] magrittr_2.0.1          codetools_0.2-18        promises_1.2.0.1        ellipsis_0.3.2          htmltools_0.5.1.1       mime_0.10              
[37] colorspace_2.0-1        xtable_1.8-6            httpuv_1.6.1            miniUI_0.1.1.1          doParallel_1.0.16       munsell_0.5.0          
[43] crayon_1.4.1

What may be causing this?

tylermorganwall commented 3 years ago

Does it crash when you run a basic rgl example? What happens when you run the following?

library(rgl)
with(iris, plot3d(Sepal.Length, Sepal.Width, Petal.Length, 
                  type="s", col=as.numeric(Species)))

zavud commented 3 years ago

@tylermorganwall, when I run this code everything works fine, and I even can drag the 3d plot which was not the case with my satellite image's 3d plot

tylermorganwall commented 3 years ago

What happens when you try this example?

library(rgl)
filename <- tempfile(fileext = ".png")
png(filename = filename)
plot(rnorm(1000), rnorm(1000))
dev.off()
open3d()
xyz <- cbind(c(0,1,1,0), 0, c(0,0,1,1))
quads3d(xyz, texture = filename, texcoords = xyz[,c(1, 3)]*2, col = "white", specular = "black")

Try installing the latest version of rgl from github and try again. If it still doesn't work, copy and paste the installation output here, it's almost certainly something missing on your system that's affecting rgl (and will likely appear as a warning when the installation script runs)

remotes::install_github("dmurdoch/rgl")

zavud commented 3 years ago

This code runs perfectly fine as well (it is supposed to give me a draggable "plane" holding 4 1d plots, right?). I reinstalled the rgl package (using remotes::install_github("dmurdoch/rgl")) and then tried my 3d satellite imagery code again (after restarting the session). The same problem still exists (static 3d map, session abortion).

The installation output:

> remotes::install_github("dmurdoch/rgl", force = T)
Downloading GitHub repo dmurdoch/rgl@HEAD
√  checking for file 'C:\Users\zavud\AppData\Local\Temp\RtmpIR3ny0\remotes3d40212b142c\dmurdoch-rgl-b055034/DESCRIPTION' ... 
-  preparing 'rgl': (12.2s)
√  checking DESCRIPTION meta-information ... 
-  cleaning src
-  checking for LF line-endings in source and make files and shell scripts (671ms)
-  checking for empty or unneeded directories (404ms)
-  building 'rgl_0.106.23.tar.gz'
   Warning: file 'rgl/cleanup' did not have execute permissions: corrected
   Warning: file 'rgl/configure' did not have execute permissions: corrected

Installing package into ‘C:/Users/zavud/Documents/R/win-library/4.1’
(as ‘lib’ is unspecified)
* installing *source* package 'rgl' ...
** using staged installation
** libs

*** arch - i386
"C:/PROGRA~1/R/R-41~1.0/bin/i386/Rscript.exe" "../tools/winlibs.R" 2.10.4
sed -e "s^@RGL_NO_OPENGL@^FALSE^" ../R/noOpenGL.R.in > ../R/noOpenGL.R
"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ABCLineSet.cpp -o ABCLineSet.o
"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BBoxDeco.cpp -o BBoxDeco.o
BBoxDeco.cpp: In member function 'rgl::Vec3 rgl::BBoxDeco::marginVecToDataVec(rgl::Vec3, rgl::RenderContext*, rgl::Material*)':
BBoxDeco.cpp:827:14: warning: 'line' may be used uninitialized in this function [-Wmaybe-uninitialized]
   result[line] = marginvec.y*scale[line] + trans[line];
              ^
BBoxDeco.cpp: In member function 'rgl::Vec3 rgl::BBoxDeco::marginNormalToDataNormal(rgl::Vec3, rgl::RenderContext*, rgl::Material*)':
BBoxDeco.cpp:840:40: warning: 'line' may be used uninitialized in this function [-Wmaybe-uninitialized]
   result[line] = marginvec.y/scale[line];
                                        ^
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"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c TextSet.cpp -o TextSet.o
"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Texture.cpp -o Texture.o
"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Viewpoint.cpp -o Viewpoint.o
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"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c assert.cpp -o assert.o
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callbacks.cpp: In function 'void userAxis(void*, int, int*)':
callbacks.cpp:188:17: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   for (i = 0; i < 3 & j < 3; i++) {
               ~~^~~
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"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c platform.cpp -o platform.o
"C:/RBuildTools/4.0/mingw32/bin/"gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c pretty.c -o pretty.o
"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c render.cpp -o render.o
"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c rglmath.cpp -o rglmath.o
"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c rglview.cpp -o rglview.o
"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c scene.cpp -o scene.o
"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c select.cpp -o select.o
"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c subscene.cpp -o subscene.o
"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c win32gui.cpp -o win32gui.o
win32gui.cpp: In member function 'virtual rgl::GLFont* rgl::Win32WindowImpl::getFont(const char*, int, double, bool)':
win32gui.cpp:449:22: warning: unused variable 'pidlFonts' [-Wunused-variable]
         LPITEMIDLIST pidlFonts;
                      ^~~~~~~~~
"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c win32lib.cpp -o win32lib.o
"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c x11gui.cpp -o x11gui.o
"C:/RBuildTools/4.0/mingw32/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c x11lib.cpp -o x11lib.o
C:/RBuildTools/4.0/mingw32/bin/g++ -shared -s -static-libgcc -o rgl.dll rgl-win.def ABCLineSet.o BBoxDeco.o Background.o ClipPlane.o Color.o Disposable.o Light.o LineSet.o LineStripSet.o Material.o NULLgui.o PlaneSet.o PointSet.o PrimitiveSet.o RenderContext.o Shape.o SphereMesh.o SphereSet.o SpriteSet.o String.o Surface.o TextSet.o Texture.o Viewpoint.o api.o assert.o callbacks.o device.o devicemanager.o fps.o ftgl.o geom.o gl2ps.o glErrors.o glgui.o gui.o init.o par3d.o pixmap.o platform.o pretty.o render.o rglmath.o rglview.o scene.o select.o subscene.o win32gui.o win32lib.o x11gui.o x11lib.o -L../windows/freetype-2.10.4/lib/i386 -lfreetype -lpng -lz -lgdi32 -lopengl32 -lglu32 -LC:/PROGRA~1/R/R-41~1.0/bin/i386 -lR
installing to C:/Users/zavud/Documents/R/win-library/4.1/00LOCK-rgl/00new/rgl/libs/i386

*** arch - x64
"C:/PROGRA~1/R/R-41~1.0/bin/x64/Rscript.exe" "../tools/winlibs.R" 2.10.4
sed -e "s^@RGL_NO_OPENGL@^FALSE^" ../R/noOpenGL.R.in > ../R/noOpenGL.R
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ABCLineSet.cpp -o ABCLineSet.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BBoxDeco.cpp -o BBoxDeco.o
BBoxDeco.cpp: In member function 'rgl::Vec3 rgl::BBoxDeco::marginVecToDataVec(rgl::Vec3, rgl::RenderContext*, rgl::Material*)':
BBoxDeco.cpp:827:14: warning: 'line' may be used uninitialized in this function [-Wmaybe-uninitialized]
   result[line] = marginvec.y*scale[line] + trans[line];
              ^
BBoxDeco.cpp: In member function 'rgl::Vec3 rgl::BBoxDeco::marginNormalToDataNormal(rgl::Vec3, rgl::RenderContext*, rgl::Material*)':
BBoxDeco.cpp:840:40: warning: 'line' may be used uninitialized in this function [-Wmaybe-uninitialized]
   result[line] = marginvec.y/scale[line];
                                        ^
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Background.cpp -o Background.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ClipPlane.cpp -o ClipPlane.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Color.cpp -o Color.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Disposable.cpp -o Disposable.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Light.cpp -o Light.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c LineSet.cpp -o LineSet.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c LineStripSet.cpp -o LineStripSet.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Material.cpp -o Material.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c NULLgui.cpp -o NULLgui.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c PlaneSet.cpp -o PlaneSet.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c PointSet.cpp -o PointSet.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c PrimitiveSet.cpp -o PrimitiveSet.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RenderContext.cpp -o RenderContext.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Shape.cpp -o Shape.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SphereMesh.cpp -o SphereMesh.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SphereSet.cpp -o SphereSet.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SpriteSet.cpp -o SpriteSet.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c String.cpp -o String.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Surface.cpp -o Surface.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c TextSet.cpp -o TextSet.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Texture.cpp -o Texture.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Viewpoint.cpp -o Viewpoint.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c api.cpp -o api.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c assert.cpp -o assert.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c callbacks.cpp -o callbacks.o
callbacks.cpp: In function 'void userAxis(void*, int, int*)':
callbacks.cpp:188:17: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   for (i = 0; i < 3 & j < 3; i++) {
               ~~^~~
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c device.cpp -o device.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c devicemanager.cpp -o devicemanager.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c fps.cpp -o fps.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ftgl.cpp -o ftgl.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c geom.cpp -o geom.o
"C:/RBuildTools/4.0/mingw64/bin/"gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c gl2ps.c -o gl2ps.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c glErrors.cpp -o glErrors.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c glgui.cpp -o glgui.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c gui.cpp -o gui.o
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"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c scene.cpp -o scene.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c select.cpp -o select.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c subscene.cpp -o subscene.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c win32gui.cpp -o win32gui.o
win32gui.cpp: In member function 'virtual rgl::GLFont* rgl::Win32WindowImpl::getFont(const char*, int, double, bool)':
win32gui.cpp:449:22: warning: unused variable 'pidlFonts' [-Wunused-variable]
         LPITEMIDLIST pidlFonts;
                      ^~~~~~~~~
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c win32lib.cpp -o win32lib.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c x11gui.cpp -o x11gui.o
"C:/RBuildTools/4.0/mingw64/bin/"g++  -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG -DHAVE_PNG_H -DHAVE_FREETYPE -Iext -Iext/ftgl -I../windows/freetype-2.10.4/include -I../windows/freetype-2.10.4/include/freetype2         -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c x11lib.cpp -o x11lib.o
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tylermorganwall commented 3 years ago

Is this only happening with your data, or can you run the following code and get a draggable 3D plot?

volcano %>%
  sphere_shade() %>%
  plot_3d(volcano)

zavud commented 3 years ago

This one does give me a draggable 3D plot. Perhaps something is wrong with the elevation data I downloaded from the website you showed in this tutorial. I wander why would it be the case?

tylermorganwall commented 3 years ago

Yes, it's likely something in the data, or an issue while processing the data. If you can post your full script I can help you debug.

zavud commented 3 years ago

Here is the full script. Please, note that I have made some comments about some errors etc.:

library(rayshader)
library(sp)
library(raster)
library(scales)

# load elevation data
el_files = list.files(pattern = ".hgt", full.names = T)
el1 = raster::raster(el_files[1])
el2 = raster::raster(el_files[2])
el = raster::merge(el1, el2)
rm(el1, el2)

plot(el)
#height_shade(raster_to_matrix(el)) %>% plot_map()

# load raster image
raster_files = list.files(pattern = ".TIF")
r = raster_files[3] |> raster::raster()
g = raster_files[2] |> raster::raster()
b = raster_files[1] |> raster::raster()
rgb = raster::stack(r, g, b)
plotRGB(rgb, scale = 255^2)
rgb_corrected = sqrt(raster::stack(r, g, b))
plotRGB(rgb_corrected)

# combining the 2 datasets
raster::crs(el)
raster::crs(r)

el = raster::projectRaster(el, crs = crs(r), method = "bilinear")
crs(el)

# crop to the study area
shp = rgdal::readOGR("vector_study_area_rectangle") # this is a polygon of my study area
shp = shp[shp$fid==1,]
plot(shp)
crs(shp) = crs(r)
crs(shp)

el_cropped = crop(el, shp)
rgb_cropped = crop(rgb_corrected, shp)
plot(el_cropped)

names(rgb_cropped) = c("r", "g", "b")
names(rgb_cropped)

r = raster_to_matrix(rgb_cropped$r)
g = raster_to_matrix(rgb_cropped$g)
b = raster_to_matrix(rgb_cropped$b)

el_mat = raster_to_matrix(el_cropped)

rgb_array = array(0, dim = c(nrow(r), ncol(r), 3))
dim(rgb_array)

rgb_array[,,1] = r / 255
rgb_array[,,2] = g / 255
rgb_array[,,3] = b / 255

rgb_array = aperm(rgb_array, c(2, 1, 3))

plot_map(rgb_array) # this gives an error saying: Error in grDevices::rgb(RGB[, 1], RGB[, 2], RGB[, 3], alpha = alpha, maxColorValue = scale) : color intensity 1.00391, not in [0,1]
rgb_contrast = scales::rescale(rgb_array, to=c(0, 1))
plot_map(rgb_contrast) # this code produces a really dark image

# the following code is the last code that i can run before r crashing
# this opens an rgl window, that is static and r crashes when i close it
plot_3d(rgb_contrast, el_mat, windowsize = c(1100,900), zscale = 15, shadowdepth = -50,
        zoom=0.5, phi=45,theta=-45,fov=70, background = "#F2E1D0", shadowcolor = "#523E2B")

Here is the static 3D plot (using only plot_3d(rgb_contrast, el_mat):

tylermorganwall commented 3 years ago

What happens when you only use el_mat along with rayshader functions to create the 3D plot? E.g.


el_mat |>
  sphere_shade() |>
  plot_3d(el_mat,zscale=15)

Also, what's the output of range(rgb_array) before scaling?

zavud commented 3 years ago

This opens a small rgl window with nothing appearing (please see the screenshot below). Also, when I close this window, R crashes again.

el_mat |>
  sphere_shade() |>
  plot_3d(el_mat,zscale=15)

Rgl window

Also:

> range(rgb_array)
[1] 0.307637 1.003914

tylermorganwall commented 3 years ago

What's does range(el_mat) report, and what does image(el_mat, useRaster = TRUE) look like? It looks like there's something odd with your elevation matrix.

zavud commented 3 years ago

> range(el_mat)
[1] 262.4992 819.5355

> image(el_mat, useRaster = TRUE)

Rplot

tylermorganwall commented 3 years ago

What does dim(el_mat), dim(rgb_contrast), class(el_mat), and class(rgb_contrast) return?

zavud commented 3 years ago

> dim(el_mat)
[1] 1151  656
> dim(rgb_contrast)
[1] 675 772   3
> class(el_mat)
[1] "matrix" "array" 
> class(rgb_contrast)
[1] "array"

tylermorganwall commented 3 years ago

Can you control the camera with render_camera()?

zavud commented 3 years ago

Yes I can. I used the examples in this webpage and the render_camera() indeed seems to work fine.

tylermorganwall commented 3 years ago

Do you have a link to the actual data that is causing this issue?

zavud commented 3 years ago

You mean the elevation data I downloaded from the website you show in the tutorial? If so, I have the extent of the area which is contained by 2 "squares" in that database. It means you would need to download 2 of them, merge and crop the specific area.

tylermorganwall commented 3 years ago

Yes. In order to determine if there's an issue, I need a fully reproducible example with the code and data.

glorious1 commented 3 years ago

This is a long thread, but I didn't see where you said exactly how you are closing the rgl window. If you're doing it manually in the OS, yes, that will crash R in my experience. If you do it in R with rgl::rgl.close(), you should be okay.

tylermorganwall commented 2 years ago

Closing because R crashing when the X11 window is closed is an rgl issue.

tylermorganwall / rayshader

R session gets aborted as soon as I close the rgl window #170