When i tried installing typedb-bio dependencies with the given requirements.txt file, I got the following error. However, it worked to install the dependencies when I manually did pip install for each one and left out the version number, thus getting the most recent version of each dependency.
Note, I could not include the full error message due to github's character limit.
(.venv) PS C:\Users\jackn\TypeDBBio\typedb-bio> pip install -r requirements.txt
Collecting certifi==2020.12.5
Using cached certifi-2020.12.5-py2.py3-none-any.whl (147 kB)
Collecting chardet==4.0.0
Using cached chardet-4.0.0-py2.py3-none-any.whl (178 kB)
Collecting typedb-client==2.9.0
Using cached typedb_client-2.9.0-py2.py3-none-any.whl
Collecting idna==2.10
Using cached idna-2.10-py2.py3-none-any.whl (58 kB)
Collecting numpy==1.20.1
Using cached numpy-1.20.1.zip (7.8 MB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting pandas==1.2.2
Using cached pandas-1.2.2.tar.gz (5.5 MB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting python-dateutil==2.8.1
Using cached python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB)
Collecting pytz==2021.1
Using cached pytz-2021.1-py2.py3-none-any.whl (510 kB)
Collecting requests==2.25.1
Using cached requests-2.25.1-py2.py3-none-any.whl (61 kB)
Collecting six==1.15.0
Using cached six-1.15.0-py2.py3-none-any.whl (10 kB)
Collecting untangle==1.1.1
Using cached untangle-1.1.1-py3-none-any.whl
Collecting urllib3==1.26.5
Using cached urllib3-1.26.5-py2.py3-none-any.whl (138 kB)
Collecting wget==3.2
Using cached wget-3.2-py3-none-any.whl
Collecting protobuf==3.15.5
Using cached protobuf-3.15.5-py2.py3-none-any.whl (173 kB)
Collecting typedb-protocol==2.9.0
Using cached typedb_protocol-2.9.0-py2.py3-none-any.whl
Collecting grpcio==1.43.0
Using cached grpcio-1.43.0-cp310-cp310-win_amd64.whl (3.4 MB)
Building wheels for collected packages: numpy, pandas
Building wheel for numpy (pyproject.toml) ... error
error: subprocess-exited-with-error
× Building wheel for numpy (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [867 lines of output]
setup.py:66: RuntimeWarning: NumPy 1.20.1 may not yet support Python 3.10.
warnings.warn(
Running from numpy source directory.
C:\Users\jackn\AppData\Local\Temp\pip-install-zlxuaphn\numpy_fadd88870e89452ea819b3ab5da6ed3c\tools\cythonize.py:67: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
from distutils.version import LooseVersion
numpy/random\_bounded_integers.pxd.in has not changed
numpy/random\bit_generator.pyx has not changed
numpy/random\mtrand.pyx has not changed
Processing numpy/random\_bounded_integers.pyx
numpy/random\_bounded_integers.pyx.in has not changed
numpy/random\_common.pyx has not changed
numpy/random\_generator.pyx has not changed
numpy/random\_mt19937.pyx has not changed
numpy/random\_pcg64.pyx has not changed
numpy/random\_philox.pyx has not changed
numpy/random\_sfc64.pyx has not changed
Cythonizing sources
blas_opt_info:
blas_mkl_info:
No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
customize MSVCCompiler
libraries mkl_rt not found in ['C:\\Users\\jackn\\\TypeDBBio\\typedb-bio\\.venv\\lib', 'C:\\']
NOT AVAILABLE
blis_info:
libraries blis not found in ['C:\\Users\\jackn\\\TypeDBBio\\typedb-bio\\.venv\\lib', 'C:\\']
NOT AVAILABLE
openblas_info:
libraries openblas not found in ['C:\\Users\\jackn\\\TypeDBBio\\typedb-bio\\.venv\\lib', 'C:\\']
get_default_fcompiler: matching types: '['gnu', 'intelv', 'absoft', 'compaqv', 'intelev', 'gnu95', 'g95', 'intelvem', 'intelem', 'flang']'
customize GnuFCompiler
Could not locate executable g77
Could not locate executable f77
customize IntelVisualFCompiler
Could not locate executable ifort
Could not locate executable ifl
customize AbsoftFCompiler
Could not locate executable f90
customize CompaqVisualFCompiler
Could not locate executable DF
customize IntelItaniumVisualFCompiler
Could not locate executable efl
customize Gnu95FCompiler
Found executable C:\Program Files\mingw-w64\x86_64-8.1.0-posix-seh-rt_v6-rev0\mingw64\bin\gfortran.exe
Using built-in specs.
COLLECT_GCC=C:\Program Files\mingw-w64\x86_64-8.1.0-posix-seh-rt_v6-rev0\mingw64\bin\gfortran.exe
COLLECT_LTO_WRAPPER=C:/Program\ Files/mingw-w64/x86_64-8.1.0-posix-seh-rt_v6-rev0/mingw64/bin/../libexec/gcc/x86_64-w64-mingw32/8.1.0/lto-wrapper.exe
Target: x86_64-w64-mingw32
Configured with: ../../../src/gcc-8.1.0/configure --host=x86_64-w64-mingw32 --build=x86_64-w64-mingw32 --target=x86_64-w64-mingw32 --prefix=/mingw64 --with-sysroot=/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64 --enable-shared --enable-static --disable-multilib --enable-languages=c,c++,fortran,lto --enable-libstdcxx-time=yes --enable-threads=posix --enable-libgomp --enable-libatomic --enable-lto --enable-graphite --enable-checking=release --enable-fully-dynamic-string --enable-version-specific-runtime-libs --disable-libstdcxx-pch --disable-libstdcxx-debug --enable-bootstrap --disable-rpath --disable-win32-registry --disable-nls --disable-werror --disable-symvers --with-gnu-as --with-gnu-ld --with-arch=nocona --with-tune=core2 --with-libiconv --with-system-zlib --with-gmp=/c/mingw810/prerequisites/x86_64-w64-mingw32-static --with-mpfr=/c/mingw810/prerequisites/x86_64-w64-mingw32-static --with-mpc=/c/mingw810/prerequisites/x86_64-w64-mingw32-static --with-isl=/c/mingw810/prerequisites/x86_64-w64-mingw32-static --with-pkgversion='x86_64-posix-seh-rev0, Built by MinGW-W64 project' --with-bugurl=https://sourceforge.net/projects/mingw-w64 CFLAGS='-O2 -pipe -fno-ident -I/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64/opt/include -I/c/mingw810/prerequisites/x86_64-zlib-static/include -I/c/mingw810/prerequisites/x86_64-w64-mingw32-static/include' CXXFLAGS='-O2 -pipe -fno-ident -I/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64/opt/include -I/c/mingw810/prerequisites/x86_64-zlib-static/include -I/c/mingw810/prerequisites/x86_64-w64-mingw32-static/include' CPPFLAGS=' -I/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64/opt/include -I/c/mingw810/prerequisites/x86_64-zlib-static/include -I/c/mingw810/prerequisites/x86_64-w64-mingw32-static/include' LDFLAGS='-pipe -fno-ident -L/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64/opt/lib -L/c/mingw810/prerequisites/x86_64-zlib-static/lib -L/c/mingw810/prerequisites/x86_64-w64-mingw32-static/lib '
Thread model: posix
gcc version 8.1.0 (x86_64-posix-seh-rev0, Built by MinGW-W64 project)
NOT AVAILABLE
atlas_3_10_blas_threads_info:
Setting PTATLAS=ATLAS
libraries tatlas not found in ['C:\\Users\\jackn\\\TypeDBBio\\typedb-bio\\.venv\\lib', 'C:\\']
NOT AVAILABLE
atlas_3_10_blas_info:
libraries satlas not found in ['C:\\Users\\jackn\\\TypeDBBio\\typedb-bio\\.venv\\lib', 'C:\\']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in ['C:\\Users\\jackn\\\TypeDBBio\\typedb-bio\\.venv\\lib', 'C:\\']
NOT AVAILABLE
atlas_blas_info:
libraries f77blas,cblas,atlas not found in ['C:\\Users\\jackn\\\TypeDBBio\\typedb-bio\\.venv\\lib', 'C:\\']
NOT AVAILABLE
C:\Users\jackn\AppData\Local\Temp\pip-install-zlxuaphn\numpy_fadd88870e89452ea819b3ab5da6ed3c\numpy\distutils\system_info.py:1989: UserWarning:
Optimized (vendor) Blas libraries are not found.
Falls back to netlib Blas library which has worse performance.
A better performance should be easily gained by switching
Blas library.
if self._calc_info(blas):
blas_info:
libraries blas not found in ['C:\\Users\\jackn\\\TypeDBBio\\typedb-bio\\.venv\\lib', 'C:\\']
NOT AVAILABLE
C:\Users\jackn\AppData\Local\Temp\pip-install-zlxuaphn\numpy_fadd88870e89452ea819b3ab5da6ed3c\numpy\distutils\system_info.py:1989: UserWarning:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
if self._calc_info(blas):
blas_src_info:
NOT AVAILABLE
C:\Users\jackn\AppData\Local\Temp\pip-install-zlxuaphn\numpy_fadd88870e89452ea819b3ab5da6ed3c\numpy\distutils\system_info.py:1989: UserWarning:
Blas (http://www.netlib.org/blas/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [blas_src]) or by setting
the BLAS_SRC environment variable.
if self._calc_info(blas):
NOT AVAILABLE
non-existing path in 'numpy\\distutils': 'site.cfg'
lapack_opt_info:
lapack_mkl_info:
libraries mkl_rt not found in ['C:\\Users\\jackn\\\TypeDBBio\\typedb-bio\\.venv\\lib', 'C:\\']
NOT AVAILABLE
openblas_lapack_info:
libraries openblas not found in ['C:\\Users\\jackn\\\TypeDBBio\\typedb-bio\\.venv\\lib', 'C:\\']
get_default_fcompiler: matching types: '['gnu', 'intelv', 'absoft', 'compaqv', 'intelev', 'gnu95', 'g95', 'intelvem', 'intelem', 'flang']'
customize GnuFCompiler
customize IntelVisualFCompiler
customize AbsoftFCompiler
customize CompaqVisualFCompiler
customize IntelItaniumVisualFCompiler
customize Gnu95FCompiler
Using built-in specs.
COLLECT_GCC=C:\Program Files\mingw-w64\x86_64-8.1.0-posix-seh-rt_v6-rev0\mingw64\bin\gfortran.exe
COLLECT_LTO_WRAPPER=C:/Program\ Files/mingw-w64/x86_64-8.1.0-posix-seh-rt_v6-rev0/mingw64/bin/../libexec/gcc/x86_64-w64-mingw32/8.1.0/lto-wrapper.exe
Target: x86_64-w64-mingw32
Configured with: ../../../src/gcc-8.1.0/configure --host=x86_64-w64-mingw32 --build=x86_64-w64-mingw32 --target=x86_64-w64-mingw32 --prefix=/mingw64 --with-sysroot=/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64 --enable-shared --enable-static --disable-multilib --enable-languages=c,c++,fortran,lto --enable-libstdcxx-time=yes --enable-threads=posix --enable-libgomp --enable-libatomic --enable-lto --enable-graphite --enable-checking=release --enable-fully-dynamic-string --enable-version-specific-runtime-libs --disable-libstdcxx-pch --disable-libstdcxx-debug --enable-bootstrap --disable-rpath --disable-win32-registry --disable-nls --disable-werror --disable-symvers --with-gnu-as --with-gnu-ld --with-arch=nocona --with-tune=core2 --with-libiconv --with-system-zlib --with-gmp=/c/mingw810/prerequisites/x86_64-w64-mingw32-static --with-mpfr=/c/mingw810/prerequisites/x86_64-w64-mingw32-static --with-mpc=/c/mingw810/prerequisites/x86_64-w64-mingw32-static --with-isl=/c/mingw810/prerequisites/x86_64-w64-mingw32-static --with-pkgversion='x86_64-posix-seh-rev0, Built by MinGW-W64 project' --with-bugurl=https://sourceforge.net/projects/mingw-w64 CFLAGS='-O2 -pipe -fno-ident -I/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64/opt/include -I/c/mingw810/prerequisites/x86_64-zlib-static/include -I/c/mingw810/prerequisites/x86_64-w64-mingw32-static/include' CXXFLAGS='-O2 -pipe -fno-ident -I/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64/opt/include -I/c/mingw810/prerequisites/x86_64-zlib-static/include -I/c/mingw810/prerequisites/x86_64-w64-mingw32-static/include' CPPFLAGS=' -I/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64/opt/include -I/c/mingw810/prerequisites/x86_64-zlib-static/include -I/c/mingw810/prerequisites/x86_64-w64-mingw32-static/include' LDFLAGS='-pipe -fno-ident -L/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64/opt/lib -L/c/mingw810/prerequisites/x86_64-zlib-static/lib -L/c/mingw810/prerequisites/x86_64-w64-mingw32-static/lib '
Thread model: posix
gcc version 8.1.0 (x86_64-posix-seh-rev0, Built by MinGW-W64 project)
NOT AVAILABLE
openblas_clapack_info:
libraries openblas,lapack not found in ['C:\\Users\\jackn\\\TypeDBBio\\typedb-bio\\.venv\\lib', 'C:\\']
get_default_fcompiler: matching types: '['gnu', 'intelv', 'absoft', 'compaqv', 'intelev', 'gnu95', 'g95', 'intelvem', 'intelem', 'flang']'
customize GnuFCompiler
customize IntelVisualFCompiler
customize AbsoftFCompiler
customize CompaqVisualFCompiler
customize IntelItaniumVisualFCompiler
customize Gnu95FCompiler
Using built-in specs.
COLLECT_GCC=C:\Program Files\mingw-w64\x86_64-8.1.0-posix-seh-rt_v6-rev0\mingw64\bin\gfortran.exe
COLLECT_LTO_WRAPPER=C:/Program\ Files/mingw-w64/x86_64-8.1.0-posix-seh-rt_v6-rev0/mingw64/bin/../libexec/gcc/x86_64-w64-mingw32/8.1.0/lto-wrapper.exe
Target: x86_64-w64-mingw32
Configured with: ../../../src/gcc-8.1.0/configure --host=x86_64-w64-mingw32 --build=x86_64-w64-mingw32 --target=x86_64-w64-mingw32 --prefix=/mingw64 --with-sysroot=/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64 --enable-shared --enable-static --disable-multilib --enable-languages=c,c++,fortran,lto --enable-libstdcxx-time=yes --enable-threads=posix --enable-libgomp --enable-libatomic --enable-lto --enable-graphite --enable-checking=release --enable-fully-dynamic-string --enable-version-specific-runtime-libs --disable-libstdcxx-pch --disable-libstdcxx-debug --enable-bootstrap --disable-rpath --disable-win32-registry --disable-nls --disable-werror --disable-symvers --with-gnu-as --with-gnu-ld --with-arch=nocona --with-tune=core2 --with-libiconv --with-system-zlib --with-gmp=/c/mingw810/prerequisites/x86_64-w64-mingw32-static --with-mpfr=/c/mingw810/prerequisites/x86_64-w64-mingw32-static --with-mpc=/c/mingw810/prerequisites/x86_64-w64-mingw32-static --with-isl=/c/mingw810/prerequisites/x86_64-w64-mingw32-static --with-pkgversion='x86_64-posix-seh-rev0, Built by MinGW-W64 project' --with-bugurl=https://sourceforge.net/projects/mingw-w64 CFLAGS='-O2 -pipe -fno-ident -I/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64/opt/include -I/c/mingw810/prerequisites/x86_64-zlib-static/include -I/c/mingw810/prerequisites/x86_64-w64-mingw32-static/include' CXXFLAGS='-O2 -pipe -fno-ident -I/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64/opt/include -I/c/mingw810/prerequisites/x86_64-zlib-static/include -I/c/mingw810/prerequisites/x86_64-w64-mingw32-static/include' CPPFLAGS=' -I/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64/opt/include -I/c/mingw810/prerequisites/x86_64-zlib-static/include -I/c/mingw810/prerequisites/x86_64-w64-mingw32-static/include' LDFLAGS='-pipe -fno-ident -L/c/mingw810/x86_64-810-posix-seh-rt_v6-rev0/mingw64/opt/lib -L/c/mingw810/prerequisites/x86_64-zlib-static/lib -L/c/mingw810/prerequisites/x86_64-w64-mingw32-static/lib '
Thread model: posix
gcc version 8.1.0 (x86_64-posix-seh-rev0, Built by MinGW-W64 project)
NOT AVAILABLE
...
building 'pandas._libs.internals' extension
"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX86\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DNPY_NO_DEPRECATED_API=0 -IC:\Users\jackn\AppData\Local\Temp\pip-build-env-yzajomhp\overlay\Lib\site-packages\numpy\core\include "-IC:\Users\jackn\TypeDBBio\typedb-bio\.venv\include" -IC:\Users\jackn\AppData\Local\Programs\Python\Python310\include -IC:\Users\jackn\AppData\Local\Programs\Python\Python310\Include "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\ATLMFC\include" "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /Tcpandas\_libs/internals.c /Fobuild\temp.win-amd64-cpython-310\Release\pandas\_libs/internals.obj
internals.c
pandas\_libs/internals.c(4402): warning C4244: 'function': conversion from 'Py_ssize_t' to 'double', possible loss of data
pandas\_libs/internals.c(4402): warning C4244: 'function': conversion from 'Py_ssize_t' to 'double', possible loss of data
pandas\_libs/internals.c(7272): warning C4244: 'function': conversion from 'Py_ssize_t' to 'double', possible loss of data
pandas\_libs/internals.c(7272): warning C4244: 'function': conversion from 'Py_ssize_t' to 'double', possible loss of data
pandas\_libs/internals.c(7272): warning C4244: 'function': conversion from 'Py_ssize_t' to 'double', possible loss of data
"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX86\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO "/LIBPATH:C:\Users\jackn\TypeDBBio\typedb-bio\.venv\libs" /LIBPATH:C:\Users\jackn\AppData\Local\Programs\Python\Python310\libs /LIBPATH:C:\Users\jackn\AppData\Local\Programs\Python\Python310 "/LIBPATH:C:\Users\jackn\TypeDBBio\typedb-bio\.venv\PCbuild\amd64" "/LIBPATH:C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\ATLMFC\lib\x64" "/LIBPATH:C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" /EXPORT:PyInit_internals build\temp.win-amd64-cpython-310\Release\pandas\_libs/internals.obj /OUT:build\lib.win-amd64-cpython-310\pandas\_libs\internals.cp310-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-310\Release\pandas\_libs\internals.cp310-win_amd64.lib
Creating library build\temp.win-amd64-cpython-310\Release\pandas\_libs\internals.cp310-win_amd64.lib and object build\temp.win-amd64-cpython-310\Release\pandas\_libs\internals.cp310-win_amd64.exp
Generating code
Finished generating code
building 'pandas._libs.interval' extension
"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX86\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DNPY_NO_DEPRECATED_API=0 -I.\pandas\_libs\tslibs -Ipandas/_libs/src/klib -IC:\Users\jackn\AppData\Local\Temp\pip-build-env-yzajomhp\overlay\Lib\site-packages\numpy\core\include "-IC:\Users\jackn\TypeDBBio\typedb-bio\.venv\include" -IC:\Users\jackn\AppData\Local\Programs\Python\Python310\include -IC:\Users\jackn\AppData\Local\Programs\Python\Python310\Include "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\ATLMFC\include" "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /Tcpandas\_libs/interval.c /Fobuild\temp.win-amd64-cpython-310\Release\pandas\_libs/interval.obj
interval.c
C:\Users\jackn\AppData\Local\Temp\pip-install-zlxuaphn\pandas_74750eabc4bb465784680dc36ae0827a\pandas\_libs\src\klib\khash.h(705): warning C4090: 'function': different 'const' qualifiers
pandas/_libs/src/klib\khash_python.h(163): warning C4244: '=': conversion from 'Py_hash_t' to 'khint_t', possible loss of data
pandas/_libs/src/klib\khash_python.h(169): warning C4244: '=': conversion from 'Py_hash_t' to 'khint_t', possible loss of data
pandas/_libs/src/klib\khash_python.h(174): warning C4090: 'function': different 'const' qualifiers
pandas\_libs/interval.c(11602): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
pandas\_libs/interval.c(13256): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX86\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO "/LIBPATH:C:\Users\jackn\TypeDBBio\typedb-bio\.venv\libs" /LIBPATH:C:\Users\jackn\AppData\Local\Programs\Python\Python310\libs /LIBPATH:C:\Users\jackn\AppData\Local\Programs\Python\Python310 "/LIBPATH:C:\Users\jackn\TypeDBBio\typedb-bio\.venv\PCbuild\amd64" "/LIBPATH:C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\ATLMFC\lib\x64" "/LIBPATH:C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" /EXPORT:PyInit_interval build\temp.win-amd64-cpython-310\Release\pandas\_libs/interval.obj /OUT:build\lib.win-amd64-cpython-310\pandas\_libs\interval.cp310-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-310\Release\pandas\_libs\interval.cp310-win_amd64.lib
Creating library build\temp.win-amd64-cpython-310\Release\pandas\_libs\interval.cp310-win_amd64.lib and object build\temp.win-amd64-cpython-310\Release\pandas\_libs\interval.cp310-win_amd64.exp
Generating code
Finished generating code
building 'pandas._libs.join' extension
"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX86\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DNPY_NO_DEPRECATED_API=0 -Ipandas/_libs/src/klib -IC:\Users\jackn\AppData\Local\Temp\pip-build-env-yzajomhp\overlay\Lib\site-packages\numpy\core\include -IC:\Users\jackn\AppData\Local\Temp\pip-build-env-yzajomhp\overlay\Lib\site-packages\numpy\core\include -IC:\Users\jackn\AppData\Local\Temp\pip-build-env-yzajomhp\overlay\Lib\site-packages\numpy\core\include -IC:\Users\jackn\AppData\Local\Temp\pip-build-env-yzajomhp\overlay\Lib\site-packages\numpy\core\include -IC:\Users\jackn\AppData\Local\Temp\pip-build-env-yzajomhp\overlay\Lib\site-packages\numpy\core\include -IC:\Users\jackn\AppData\Local\Temp\pip-build-env-yzajomhp\overlay\Lib\site-packages\numpy\core\include -IC:\Users\jackn\AppData\Local\Temp\pip-build-env-yzajomhp\overlay\Lib\site-packages\numpy\core\include "-IC:\Users\jackn\TypeDBBio\typedb-bio\.venv\include" -IC:\Users\jackn\AppData\Local\Programs\Python\Python310\include -IC:\Users\jackn\AppData\Local\Programs\Python\Python310\Include "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\ATLMFC\include" "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /Tcpandas\_libs/join.c /Fobuild\temp.win-amd64-cpython-310\Release\pandas\_libs/join.obj
join.c
C:\Users\jackn\AppData\Local\Temp\pip-install-zlxuaphn\pandas_74750eabc4bb465784680dc36ae0827a\pandas\_libs\src\klib\khash.h(705): warning C4090: 'function': different 'const' qualifiers
pandas/_libs/src/klib\khash_python.h(163): warning C4244: '=': conversion from 'Py_hash_t' to 'khint_t', possible loss of data
pandas/_libs/src/klib\khash_python.h(169): warning C4244: '=': conversion from 'Py_hash_t' to 'khint_t', possible loss of data
pandas/_libs/src/klib\khash_python.h(174): warning C4090: 'function': different 'const' qualifiers
pandas\_libs/join.c(9927): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
pandas\_libs/join.c(15229): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
pandas\_libs/join.c(25991): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
pandas\_libs/join.c(36323): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
pandas\_libs/join.c(49716): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
pandas\_libs/join.c(50301): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
pandas\_libs/join.c(81926): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
pandas\_libs/join.c(82511): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
pandas\_libs/join.c(114016): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
pandas\_libs/join.c(114601): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
pandas\_libs/join.c(151374): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
pandas\_libs/join.c(160023): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
pandas\_libs/join.c(168771): warning C4244: '=': conversion from 'long' to 'char', possible loss of data
"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX86\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO "/LIBPATH:C:\Users\jackn\TypeDBBio\typedb-bio\.venv\libs" /LIBPATH:C:\Users\jackn\AppData\Local\Programs\Python\Python310\libs /LIBPATH:C:\Users\jackn\AppData\Local\Programs\Python\Python310 "/LIBPATH:C:\Users\jackn\TypeDBBio\typedb-bio\.venv\PCbuild\amd64" "/LIBPATH:C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\ATLMFC\lib\x64" "/LIBPATH:C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" /EXPORT:PyInit_join build\temp.win-amd64-cpython-310\Release\pandas\_libs/join.obj /OUT:build\lib.win-amd64-cpython-310\pandas\_libs\join.cp310-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-310\Release\pandas\_libs\join.cp310-win_amd64.lib
Creating library build\temp.win-amd64-cpython-310\Release\pandas\_libs\join.cp310-win_amd64.lib and object build\temp.win-amd64-cpython-310\Release\pandas\_libs\join.cp310-win_amd64.exp
Generating code
Finished generating code
building 'pandas._libs.lib' extension
creating build\temp.win-amd64-cpython-310\Release\pandas\_libs\src
creating build\temp.win-amd64-cpython-310\Release\pandas\_libs\src\parser
"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX86\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DNPY_NO_DEPRECATED_API=0 -Ipandas\_libs -I.\pandas\_libs -I.\pandas\_libs\tslibs -Ipandas/_libs/src/klib -IC:\Users\jackn\AppData\Local\Temp\pip-build-env-yzajomhp\overlay\Lib\site-packages\numpy\core\include "-IC:\Users\jackn\TypeDBBio\typedb-bio\.venv\include" -IC:\Users\jackn\AppData\Local\Programs\Python\Python310\include -IC:\Users\jackn\AppData\Local\Programs\Python\Python310\Include "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\ATLMFC\include" "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /Tcpandas/_libs/src/parser/tokenizer.c /Fobuild\temp.win-amd64-cpython-310\Release\pandas/_libs/src/parser/tokenizer.obj
tokenizer.c
pandas/_libs/src/klib\khash.h(705): warning C4090: 'function': different 'const' qualifiers
pandas/_libs/src/parser/tokenizer.c(428): warning C4244: '=': conversion from 'int64_t' to 'int', possible loss of data
"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX86\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DNPY_NO_DEPRECATED_API=0 -Ipandas\_libs -I.\pandas\_libs -I.\pandas\_libs\tslibs -Ipandas/_libs/src/klib -IC:\Users\jackn\AppData\Local\Temp\pip-build-env-yzajomhp\overlay\Lib\site-packages\numpy\core\include "-IC:\Users\jackn\TypeDBBio\typedb-bio\.venv\include" -IC:\Users\jackn\AppData\Local\Programs\Python\Python310\include -IC:\Users\jackn\AppData\Local\Programs\Python\Python310\Include "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\ATLMFC\include" "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /Tcpandas\_libs/lib.c /Fobuild\temp.win-amd64-cpython-310\Release\pandas\_libs/lib.obj
lib.c
pandas/_libs/src/klib\khash.h(705): warning C4090: 'function': different 'const' qualifiers
pandas\_libs/lib.c(8304): warning C4244: '=': conversion from '__pyx_t_5numpy_intp_t' to 'int', possible loss of data
pandas\_libs/lib.c(8401): warning C4244: '=': conversion from '__pyx_t_5numpy_intp_t' to 'int', possible loss of data
pandas\_libs/lib.c(8469): warning C4244: '=': conversion from '__pyx_t_5numpy_intp_t' to 'int', possible loss of data
pandas\_libs/lib.c(8532): warning C4244: '=': conversion from '__pyx_t_5numpy_intp_t' to 'int', possible loss of data
"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX86\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO "/LIBPATH:C:\Users\jackn\TypeDBBio\typedb-bio\.venv\libs" /LIBPATH:C:\Users\jackn\AppData\Local\Programs\Python\Python310\libs /LIBPATH:C:\Users\jackn\AppData\Local\Programs\Python\Python310 "/LIBPATH:C:\Users\jackn\TypeDBBio\typedb-bio\.venv\PCbuild\amd64" "/LIBPATH:C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\ATLMFC\lib\x64" "/LIBPATH:C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" /EXPORT:PyInit_lib build\temp.win-amd64-cpython-310\Release\pandas/_libs/src/parser/tokenizer.obj build\temp.win-amd64-cpython-310\Release\pandas\_libs/lib.obj /OUT:build\lib.win-amd64-cpython-310\pandas\_libs\lib.cp310-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-310\Release\pandas/_libs/src/parser\lib.cp310-win_amd64.lib
Creating library build\temp.win-amd64-cpython-310\Release\pandas/_libs/src/parser\lib.cp310-win_amd64.lib and object build\temp.win-amd64-cpython-310\Release\pandas/_libs/src/parser\lib.cp310-win_amd64.exp
Generating code
Finished generating code
building 'pandas._libs.missing' extension
"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX86\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DNPY_NO_DEPRECATED_API=0 -I.\pandas\_libs\tslibs -IC:\Users\jackn\AppData\Local\Temp\pip-build-env-yzajomhp\overlay\Lib\site-packages\numpy\core\include "-IC:\Users\jackn\TypeDBBio\typedb-bio\.venv\include" -IC:\Users\jackn\AppData\Local\Programs\Python\Python310\include -IC:\Users\jackn\AppData\Local\Programs\Python\Python310\Include "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\ATLMFC\include" "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /Tcpandas\_libs/missing.c /Fobuild\temp.win-amd64-cpython-310\Release\pandas\_libs/missing.obj
missing.c
"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX86\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO "/LIBPATH:C:\Users\jackn\TypeDBBio\typedb-bio\.venv\libs" /LIBPATH:C:\Users\jackn\AppData\Local\Programs\Python\Python310\libs /LIBPATH:C:\Users\jackn\AppData\Local\Programs\Python\Python310 "/LIBPATH:C:\Users\jackn\TypeDBBio\typedb-bio\.venv\PCbuild\amd64" "/LIBPATH:C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\ATLMFC\lib\x64" "/LIBPATH:C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\lib\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\um\x64" /EXPORT:PyInit_missing build\temp.win-amd64-cpython-310\Release\pandas\_libs/missing.obj /OUT:build\lib.win-amd64-cpython-310\pandas\_libs\missing.cp310-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-310\Release\pandas\_libs\missing.cp310-win_amd64.lib
Creating library build\temp.win-amd64-cpython-310\Release\pandas\_libs\missing.cp310-win_amd64.lib and object build\temp.win-amd64-cpython-310\Release\pandas\_libs\missing.cp310-win_amd64.exp
Generating code
Finished generating code
building 'pandas._libs.parsers' extension
"C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\bin\HostX86\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -DNPY_NO_DEPRECATED_API=0 -I.\pandas\_libs -Ipandas/_libs/src/klib -Ipandas/_libs/src -IC:\Users\jackn\AppData\Local\Temp\pip-build-env-yzajomhp\overlay\Lib\site-packages\numpy\core\include "-IC:\Users\jackn\TypeDBBio\typedb-bio\.venv\include" -IC:\Users\jackn\AppData\Local\Programs\Python\Python310\inc2019\Community\VC\Tools\MSVC\14.29.30133\ATLMFC\include" "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.29.30133\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\cppwinrt" /Tcpandas/_libs/src/parser/io.c /Fobuild\temp.win-amd64-cpython-310\Release\pandas/_libs/src/parser/io.obj
io.c
pandas/_libs/src/klib\khash.h(705): warning C4090: 'function': different 'const' qualifiers
pandas/_libs/src/parser/io.c(139): error C2065: 'ssize_t': undeclared identifier
pandas/_libs/src/parser/io.c(139): error C2146: syntax error: missing ';' before identifier 'rv'
pandas/_libs/src/parser/io.c(145): error C2065: 'rv': undeclared identifier
pandas/_libs/src/parser/io.c(145): warning C4267: 'function': conversion from 'size_t' to 'unsigned int', possible loss of data
pandas/_libs/src/parser/io.c(146): error C2065: 'rv': undeclared identifier
pandas/_libs/src/parser/io.c(158): error C2065: 'rv': undeclared identifier
error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio\\2019\\Community\\VC\\Tools\\MSVC\\14.29.30133\\bin\\HostX86\\x64\\cl.exe' failed with exit code 2
[end of output]
ERROR: Failed building wheel for pandas
Failed to build numpy pandas
james-whiteside
commented
12 months ago
When i tried installing typedb-bio dependencies with the given requirements.txt file, I got the following error. However, it worked to install the dependencies when I manually did pip install for each one and left out the version number, thus getting the most recent version of each dependency.
Note, I could not include the full error message due to github's character limit.