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BioGrakn Knowledge Graph
https://blog.grakn.ai/biograkn-accelerating-biomedical-knowledge-discovery-with-a-grakn-knowledge-graph-84706768d7d4
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The test 'assemble-mock-test' would output java.nio.file.NoSuchFileException #63

Open lolski opened 5 years ago

lolski commented 5 years ago

Reproducible steps

bazel build @graknlabs_grakn_core//:assemble-mac-zip
cd bazel-bin/external/graknlabs_grakn_core/
unzip grakn-core-all-mac.zip
cd grakn-core-all-mac
./grakn server start
bazel test --test_output=streamed //migrator:assemble-mock-test

Output:

...
10:02:41.830 [grpc-default-worker-ELG-1-2] DEBUG io.grpc.netty.NettyClientHandler - [id: 0x2e64619f, L:/127.0.0.1:54882 - R:/127.0.0.1:48555] OUTBOUND DATA: streamId=873 padding=0 endStream=true length=0 bytes=
10:02:41.831 [grpc-default-worker-ELG-1-2] DEBUG io.grpc.netty.NettyClientHandler - [id: 0x2e64619f, L:/127.0.0.1:54882 - R:/127.0.0.1:48555] INBOUND HEADERS: streamId=873 headers=GrpcHttp2ResponseHeaders[grpc-status: 0] streamDependency=0 weight=16 exclusive=false padding=0 endStream=true
java.nio.file.NoSuchFileException: precisionmedicine/dataset/mock/clinvar/gene_condition_source_id.csv
    at sun.nio.fs.UnixException.translateToIOException(UnixException.java:86)
    at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:102)
    at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:107)
    at sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:214)
    at java.nio.file.Files.newByteChannel(Files.java:361)
    at java.nio.file.Files.newByteChannel(Files.java:407)
    at java.nio.file.spi.FileSystemProvider.newInputStream(FileSystemProvider.java:384)
...