typhoidgenomics / TyphiNET

TyphiNET online Salmonella Typhi AMR surveillance dashboard.
https://www.typhi.net
GNU General Public License v3.0
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fixed issue of susceptible in Plot 1 and 2 #73

Closed vLSHTM closed 8 months ago

vLSHTM commented 8 months ago

NOTE: I have identified that the generated file is producing incorrect data due to the rules defined in the generation process. One key aspect of the problem is the way "cip_pheno_qrdr_gene" is being calculated as the sum of "qnrS," "qnrB," and "qnrD." Ideally, this should result in values like "CipNS000" instead of "CipNS00." Unfortunately, I don't have access to the exact documentation of these rules, which has made it challenging for me to verify if the rules I added are indeed correct. I believe it is essential to have an expert review them to ensure their accuracy and alignment with the intended functionality.