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tyronechen / genomenlp

https://genomenlp.readthedocs.io/en/latest/
MIT License
5 stars 3 forks source link

[BUG] Requirements.txt requests non-existent pytorch==1.10.0 #2

Closed epiphyte closed 1 year ago

epiphyte commented 1 year ago

Describe the bug When trying to install the dependencies it fails with pytorch 1.10 not available.

To Reproduce python -m venv venv source venv/bin/activate pip install -r requirements.txt

Expected behavior In installs with no issue

Suggested fix pytorch was renamed torch. Replace pytorch with torch.

tyronechen commented 1 year ago

Dear @epiphyte , thanks for letting us know.

I tested this on pip and it looks like that pytorch distribution is not available there. However, installation through mamba works as it is available on anaconda.

I updated the install instructions in the README and documentation to reflect this, and added a link to mamba's install.

Once mamba is installed, mamba install -c tyronechen -c conda-forge genomenlp should work correctly.