Revamp main function, should resemble bwa structure - Githubissues

tzcoolman / FACS-OLD

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Revamp main function, should resemble bwa structure #29

Closed brainstorm closed 11 years ago

brainstorm commented 11 years ago

Outputs counts in JSON format for better testing/parsing and postprocessing.
Refactoring getopts in the build.
More flexible/clean Makefile.
1000 genomes test.