Integrate SIGcomLincs API - Githubissues

u-brite / SNVariome

Integrating protein-protein interactions and protein structure to enhance the clinical variant interactome.

MIT License

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Integrate SIGcomLincs API #2

Open sdhutchins opened 2 years ago

sdhutchins commented 2 years ago

[x] Determine what data is accessible via API - @MariaJose501
[x] Determine how API will be used within the shiny app.

We'll integrate:

[ ] GTEx Tissue-Specific Age Group Signatures
[ ] LINCS L1000 Ligand Perturbations (2021)
[ ] LINCS L1000 Chemical Perturbations Consensus Signatures
[ ] SIgnature search by gene, disease

View at https://maayanlab.cloud/sigcom-lincs/#/

sdhutchins commented 2 years ago

@Poojas241 can we find a list of data types and post here?

Poojas241 commented 2 years ago

API in shiny app and R https://community.rstudio.com/t/best-practice-for-using-external-api-in-a-shiny-app/35018 https://www.r-bloggers.com/2020/05/fetch-api-results-from-the-browser-and-send-them-to-shiny/#:~:text=You%20can%20write%20API%20calls%20using%20the%20fetch,%3D%20%22get_rand_beer%20%28%29%22%29%2C%20as%20we%20will%20see%20below%29.

sdhutchins commented 2 years ago

@MariaJose501 begin integration of this api and explore it.

sdhutchins commented 2 years ago

For sigcom lincs:

We'll integrate:

[ ] GTEx Tissue-Specific Age Group Signatures
[ ] LINCS L1000 Ligand Perturbations (2021)
[ ] LINCS L1000 Chemical Perturbations Consensus Signatures
[ ] SIgnature search by gene, disease