uab-cgds-worthey / DITTO-UI

Easy to use web interface for biologists to look for genetic variants and understand their deleteriousness using DITTO scores.
https://cgds-ditto.streamlit.app/
GNU General Public License v3.0
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OpenCravat Single variant API parser #10

Closed wilkb777 closed 11 months ago

wilkb777 commented 1 year ago

this PR adds a Parser class for easy configuration and parsing of the annotation results from the OpenCravat Single variant API. You can test out the API and verify that it's returning a Dataframe after parsing a given variant by activating the DITTO conda environment and running python src/parse.py -v 6_26090951_C_G which should return a print out of a dataframe with the parsed information from OpenCravat's API. The src/parse.py file has a main method which demo's how the parser can be used within an application.