This PR will merge current version of joss_manuscript to the master branch to bring it up to date, and then we will cut a new release. Note that joss_manuscript branch will not be deleted and it will continue to serve as the branch to be used for JOSS reviews.
This PR brings following changes to the master branch:
Improves documentation
Clarifies required args to the wrapper script
See #82 for more details.
Please fill in the checklist below and comment as needed:
[x] Was code modified? Briefly describe. Yes. See #82
[x] Was documentation modified? Briefly describe. Yes. See #82
[x] Is this a bug-fix? Briefly describe. No
[x] Is this a feature addition? Briefly describe. No
[x] Did you modify QuaC-Watch config file? If so, did you modify multiqc template
configs/multiqc_config_template.jinja2 and script src/quac_watch/create_mutliqc_configs.py as necessary? No
[x] Did you perform system-level testing manually, using ----cli_cluster_config and --snakemake_cluster_config
options, as described in the documentation? Did it pass
completely? If not why? Yes. See #82
[x] Updated Changelog.md file with change logs in recommended format? Yes. See #82
Pull request
This PR will merge current version of
joss_manuscriptto the master branch to bring it up to date, and then we will cut a new release. Note thatjoss_manuscriptbranch will not be deleted and it will continue to serve as the branch to be used for JOSS reviews.This PR brings following changes to the
masterbranch:See #82 for more details.
Please fill in the checklist below and comment as needed:
configs/multiqc_config_template.jinja2and scriptsrc/quac_watch/create_mutliqc_configs.pyas necessary? No----cli_cluster_configand--snakemake_cluster_configoptions, as described in the documentation? Did it pass completely? If not why? Yes. See #82Changelog.mdfile with change logs in recommended format? Yes. See #82Anything else reviewer should know?
No.