Open ManavalanG opened 3 years ago
mentioned in commit f7ddc28e72bc6ce9a6020e11e190de7c8d1d94fb
Not all files tagged with protected
are made read-only by snakemake. Another one of snakemake's quirks? :angry:
Question: Is this a bug in snakemake v6.0.5
, which is used in QuaC pipeline? Is it also present in snakemake v5.9.1
?
Ran QuaC pipeline with snakemake v5.9.1
. It behaved the same way as did v6.0.5
. That is, the same selective files that were write protected by v6.0.5
are the only ones write protected by v5.9.1
.
manag@login001:/scratch/manag/tmp/quac/results/test_project/analysis$ fd -l | grep -e "-r--r--r--"
-r--r--r-- 1 manag manag 54K Apr 11 18:12 project_level_qc/covviz/covviz_report.html
-r--r--r-- 1 manag manag 2.0K Apr 11 18:11 project_level_qc/indexcov/indexcov-indexcov.bed.gz
-r--r--r-- 1 manag manag 7.1K Apr 11 18:11 project_level_qc/indexcov/index.html
-r--r--r-- 1 manag manag 1.6K Apr 11 18:12 project_level_qc/mosdepth/mosdepth.html
-r--r--r-- 1 manag manag 166 Apr 11 18:11 project_level_qc/multiqc/aggregated_rename_configs.tsv
-r--r--r-- 1 manag manag 1.8M Apr 11 18:13 project_level_qc/multiqc/multiqc_report.html
-r--r--r-- 1 manag manag 271K Apr 11 18:13 project_level_qc/somalier/ancestry/somalier.somalier-ancestry.html
-r--r--r-- 1 manag manag 211K Apr 11 18:13 project_level_qc/somalier/ancestry/somalier.somalier-ancestry.tsv
-r--r--r-- 1 manag manag 23K Apr 11 18:12 project_level_qc/somalier/relatedness/somalier.html
-r--r--r-- 1 manag manag 211 Apr 11 18:12 project_level_qc/somalier/relatedness/somalier.pairs.tsv
-r--r--r-- 1 manag manag 440 Apr 11 18:12 project_level_qc/somalier/relatedness/somalier.samples.tsv
Conclusion: Switching to v5.9.1
would not solve the problem.
In GitLab by @ManavalanG on Apr 6, 2021, 08:45