uaf-arctic-eco-modeling / dvm-dos-tem

A process based Dynamic Vegetation, Dynamic Organic Soil, Terrestrial Ecosystem Model.
MIT License
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Write up description of recommended directory layout for a calibration project. #671

Open tobeycarman opened 10 months ago

tobeycarman commented 10 months ago

Not sure where this should live. Something like this:

../dvmdostem-workflows/calibration/CMT06-IMNAVIAT
├── analysis
│   └── example_notebook.ipynb
|
├── calibrated_parameters
│   ├── cmt_bgcsoil.txt
│   ├── .....
│   └── cmt_firepar.txt
├── output
│   ├── cmax_gppallignoringnitrogen
│   │   ├── ca
│   │   │   ├── calibration
│   │   │   ├── config
│   │   │   ├── last_test.finalresults
│   │   │   ├── last_test.iterationresults
│   │   │   ├── output
│   │   │   ├── parameters
│   │   │   ├── plot_optimization_fit.png
│   │   │   └── run-mask.nc
│   │   └── sa-N300
│   │       ├── info.txt
│   │       ├── initial_params_run_dir
│   │       ├── param_props.csv
│   │       ├── results.csv
│   │       ├── sample_000000000
│   │       ├── .....
│   │       ├── sample_000000299
│   │       ├── sample_matrix.csv
│   │       ├── sample_matrix_distributions.png
│   │       └── targets.csv
│   │   
│   └── nmax_krb_npp
│       ├── sa-N10
│       │   ├── info.txt
│       │   ├── initial_params_run_dir
│       │   ├── param_props.csv
│       │   ├── sample_000000000
│       │   ├── ....
│       │   ├── sample_000000009
│       │   ├── sample_matrix.csv
│       │   └── sample_matrix_distributions.png
│       └── sa-N7
│           ├── info.txt
│           ├── param_props.csv
│           └── sample_matrix.csv
|
└── working_config
    ├── ca
    │   └── cmax_gppallignoringnitrogen.yaml
    └── sa
        ├── cmax_gppallignoringnitrogen.yaml
        └── nmax_krb_npp.yaml
Elchin commented 10 months ago

Just remove it.

Elchin Jafarov

On Fri, Jan 26, 2024 at 5:01 PM tobey @.***> wrote:

Not sure where this should live. Something like this:

../dvmdostem-workflows/calibration/CMT06-IMNAVIAT ├── analysis │ └── example_notebook.ipynb ├── calibrated_parameters │ ├── cmt_bgcsoil.txt │ ├── ..... │ └── cmt_firepar.txt ├── output │ ├── cmax_gppallignoringnitrogen │ │ ├── ca │ │ │ ├── calibration │ │ │ ├── config │ │ │ ├── last_test.finalresults │ │ │ ├── last_test.iterationresults │ │ │ ├── output │ │ │ ├── parameters │ │ │ ├── plot_optimization_fit.png │ │ │ └── run-mask.nc │ │ └── sa-N300 │ │ ├── info.txt │ │ ├── initial_params_run_dir │ │ ├── param_props.csv │ │ ├── results.csv │ │ ├── sample_000000000 │ │ ├── ..... │ │ ├── sample_000000299 │ │ ├── sample_matrix.csv │ │ ├── sample_matrix_distributions.png │ │ └── targets.csv │ │ │ └── nmax_krb_npp │ ├── sa-N10 │ │ ├── info.txt │ │ ├── initial_params_run_dir │ │ ├── param_props.csv │ │ ├── sample_000000000 │ │ ├── .... │ │ ├── sample_000000009 │ │ ├── sample_matrix.csv │ │ └── sample_matrix_distributions.png │ └── sa-N7 │ ├── info.txt │ ├── param_props.csv │ └── sample_matrix.csv

└── working_config ├── ca │ └── cmax_gppallignoringnitrogen.yaml └── sa ├── cmax_gppallignoringnitrogen.yaml └── nmax_krb_npp.yaml

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