PyMC -> emcee migration

uafgeotools / vmod

volcanic source model and inversion framework in python

MIT License

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PyMC -> emcee migration #10

Closed mchristoffersen closed 1 month ago

mchristoffersen commented 3 months ago

Moving the MCMC routines over from PyMC to emcee would simplify installation - no need to use conda to install an old PyMC version from conda-forge.

What sort of validation of emcee output/setup is necessary to be confident in the correctness?

mfangaritav commented 1 month ago

I think running the notebooks that we have in the repo and getting similar outputs should be enough

mfangaritav commented 1 month ago

Ok, I'm gonna close this issue as I migrated VMOD to emcee in 2c323b4f0ffe31de9ebe4d80120ac6990f09fd76 including the notebooks that we have as examples. However, I left the function that uses pymc just in case.