Install mosdepth

[mkorobkin]

Hello,

I want to use the following bioinformatics software (mosdepth) for a research in our group (Dr. Song Liu, RPCI) and wonder if you can install it to the vortex machines:

http://bioconda.github.io/recipes/mosdepth/README.html

Here is the Github repository: https://github.com/brentp/mosdepth

Thank you very much for your help. -Mitsuko Murakami Korobkin

[aebruno]

@mkorobkin This module is now available. Tested using example bam files here. For example:

$ module load gcc
$ module load mosdepth
$ mosdepth t ./ovl.bam

[mitmurakami]

Thank you very much for the quick response! I really appreciate it.

[mitmurakami]

Hi, could you help me - I receive an error message when loading the mosdepth module as follows:

[mkorobkin@vortex1:~]$ module load gcc [mkorobkin@vortex1:~]$ module load mosdepth Lmod has detected the following error: The following module(s) are unknown: "mosdepth"

Please check the spelling or version number. Also try "module spider ..." It is also possible your cache file is out-of-date; it may help to try: $ module --ignore_cache load "mosdepth"

Also make sure that all modulefiles written in TCL start with the string #%Module

[aebruno]

@mitmurakami Please confirm you're using the new software modules. Please see the docs here

[mitmurakami]

Indeed! Thank you very much for your help, it works fine now.