HUMAnN

[namdeka]

build-request https://github.com/biobakery/humann

[dsajdak]

We have humann installed in ccrsoft/2023.01

login:~$ module spider humann

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  humann: humann/3.6
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    Description:
      HUMAnN v3 is a pipeline for efficiently and accurately determining the coverage and abundance of microbial pathways in a community from metagenomic data. Sequencing a metagenome typically produces millions of short DNA/RNA reads.
      This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. More generally, functional profiling answers the question: What are the microbes in my
      community-of-interest doing (or capable of doing)?

    You will need to load all module(s) on any one of the lines below before the "humann/3.6" module is available to load.

      gcc/11.2.0  openmpi/4.1.1
     This extension is provided by the following modules. To access the extension you must load one of the following modules. Note that any module names in parentheses show the module location in the software hierarchy.

       humann/3.6 (gcc/11.2.0 openmpi/4.1.1)

    This module provides the following extensions:

       humann/3.6 (E)

    Help:

      Description
      ===========
      HUMAnN v3 is a pipeline for efficiently
       and accurately determining the coverage and abundance
       of microbial pathways in a community from metagenomic data.
      Sequencing a metagenome typically produces millions
       of short DNA/RNA reads. This process, referred
       to as functional profiling, aims to describe the metabolic potential
       of a microbial community and its members. More generally,
       functional profiling answers the question:
       What are the microbes in my community-of-interest doing (or capable of doing)?

      More information
      ================
       - Homepage: http://huttenhower.sph.harvard.edu/humann

      Included extensions
      ===================
      humann-3.6

Names marked by a trailing (E) are extensions provided by another module.