dsajdak
commented
1 year ago @edasdemirlab We have tried to install this with GCC 11.2.0 and Python 3.9.6 and according to the log files everything seems like it works until it gets to the sanity check and fails:
== 2023-05-09 13:41:42,358 run.py:702 INFO parse_log_for_error (some may be harmless) regExp (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) found:
gurobi_cl: error while loading shared libraries: libgurobi100.so: cannot open shared object file: No such file or directory
== 2023-05-09 13:41:42,358 run.py:660 WARNING Found 1 errors in command output (output: gurobi_cl: error while loading shared libraries: libgurobi100.so: cannot open shared object file: No such file or directory)
== 2023-05-09 13:41:42,358 easyblock.py:3554 WARNING Sanity check: sanity check command gurobi_cl --help exited with code 127 (output: gurobi_cl: error while loading shared libraries: libgurobi100.so: cannot open shared object file: No such file or directory
)
== 2023-05-09 13:41:42,363 run.py:217 DEBUG run_cmd: running cmd test -f $GRB_LICENSE_FILE (in /cvmfs/soft.ccr.buffalo.edu/versions/2023.01/easybuild/software/avx512/Compiler/gcc/11.2.0/gurobi/10.0.1)
== 2023-05-09 13:41:42,363 run.py:236 INFO running cmd: test -f $GRB_LICENSE_FILE
== 2023-05-09 13:41:42,366 run.py:650 DEBUG cmd "test -f $GRB_LICENSE_FILE" exited with exit code 0 and output:
== 2023-05-09 13:41:42,366 run.py:684 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2023-05-09 13:41:42,366 easyblock.py:3556 INFO sanity check command test -f $GRB_LICENSE_FILE ran successfully! (output: )
== 2023-05-09 13:41:42,371 run.py:217 DEBUG run_cmd: running cmd python -c 'import gurobipy' (in /cvmfs/soft.ccr.buffalo.edu/versions/2023.01/easybuild/software/avx512/Compiler/gcc/11.2.0/gurobi/10.0.1)
== 2023-05-09 13:41:42,371 run.py:236 INFO running cmd: python -c 'import gurobipy'
== 2023-05-09 13:41:42,431 run.py:684 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2023-05-09 13:41:42,431 easyblock.py:3554 WARNING Sanity check: sanity check command python -c 'import gurobipy' exited with code 1 (output: Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/cvmfs/soft.ccr.buffalo.edu/versions/2023.01/easybuild/software/avx512/Compiler/gcc/11.2.0/gurobi/10.0.1/lib/python3.9/site-packages/gurobipy/__init__.py", line 1, in <module>
from .gurobipy import *
ImportError: libgurobi100.so: cannot open shared object file: No such file or directoryI'm not seeing anything online to go on so I was hoping to add to your request with EasyBuild team. Is that on a public repo that I could just comment on? Or I can share the full log file with you to share with them.
edasdemirlab
aebruno
Hello,
We plan to conduct a wide range of experiments using the Gurobi optimizer through Python. The latest version available in CCR is 9.1.1, which was released in 2020 and is outdated, as it is no longer fully supported by Gurobi. Furthermore, the latest version, 10.0.1, provides impressive performance improvements compared to 9.x.x versions.
I reached out to the Easy Build community for help in creating a recipe for Gurobi version 10.0.1, and I was fortunate to learn that they recently opened a pull request for this version a few days ago
(PR #17847 - https://github.com/easybuilders/easybuild-easyconfigs/pull/17847).
They provided me with some installation instructions, but I do not have a sufficient background in this area and am unsure how to proceed.
Here are the instructions they provided:
"grape" said:
Please read the comments in the PR regarding the license file! You may need to adjust it. Otherwise, if you run eb --from-pr 17847, you should be able to install it. You may also need to add the --robot flag.
"Kenneth Hoste (boegel)" said:
@Erdi mentioned that they need an easyconfig for Gurobi 10.0.1 with the GCC they have already installed, so a simple --from-pr won’t work. However, they can use the easyconfig file that is available in your PR and modify the toolchain and dependencies to match what they already have. Here is a starting point to get a local copy of the easyconfig file: eb --from-pr 17847 --copy-ec Gurobi-10.0.1.eb
To conclude, we were wondering if there is any possibility that you obtain and install the latest version 10.0.1 on CCR? Please let me know if these instructions work, or if you can direct me on how to request further assistance from the Easy Build community.
Best regards,
Erdi