jakirhasantalukder
commented
1 year ago same problem. I am also facing
Closed g0odplayer00 closed 1 year ago
jakirhasantalukder
commented
1 year ago same problem. I am also facing
sagagk
commented
1 year ago The same.
sagagk
commented
1 year ago I could use the package using Anaconda. It appears to work better with Python 3.8 (Current Google Colab uses 3.9, the typical downgrading generates a messy behaviour.. ). I use a terminal from Anaconda (tested in a Apple Mac Pro):
conda create -n my_env python=3.8 conda install -n my_env -c conda-forge causalml conda activate my_env conda install jupyter jupyter notebook
If someone could run this package in Colab, I appreciate it. *However, I also tried in Windows and it appears that causalml is not available in condeforge. :(
kalimosd
commented
1 year ago same in mac
talhaanwarch
commented
1 year ago Got same issue on Ubuntu 22.04 Here is full error
Preparing metadata (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [798 lines of output]
Error compiling Cython file:
------------------------------------------------------------
...
# cython: language_level=3
# cython: linetrace=True
from sklearn.tree._tree cimport Tree, TreeBuilder
from sklearn.tree._tree cimport Splitter, SplitRecord
from sklearn.tree._utils cimport StackRecord, Stack
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:9:0: 'sklearn/tree/_utils/StackRecord.pxd' not found
Error compiling Cython file:
------------------------------------------------------------
...
# cython: language_level=3
# cython: linetrace=True
from sklearn.tree._tree cimport Tree, TreeBuilder
from sklearn.tree._tree cimport Splitter, SplitRecord
from sklearn.tree._utils cimport StackRecord, Stack
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:9:0: 'sklearn/tree/_utils/Stack.pxd' not found
Error compiling Cython file:
------------------------------------------------------------
...
cdef bint is_leaf
cdef bint first = 1
cdef SIZE_t max_depth_seen = -1
cdef int rc = 0
cdef Stack stack = Stack(INITIAL_STACK_SIZE)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:90:13: 'Stack' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
cdef bint first = 1
cdef SIZE_t max_depth_seen = -1
cdef int rc = 0
cdef Stack stack = Stack(INITIAL_STACK_SIZE)
cdef StackRecord stack_record
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:91:13: 'StackRecord' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
cdef double min_weight_leaf = self.min_weight_leaf
cdef SIZE_t min_samples_split = self.min_samples_split
cdef double min_impurity_decrease = self.min_impurity_decrease
# Recursive partition (without actual recursion)
splitter.init(X, y, sample_weight_ptr)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:70:28: Cannot convert 'DOUBLE_t *' to memoryviewslice
Error compiling Cython file:
------------------------------------------------------------
...
cdef bint is_leaf
cdef bint first = 1
cdef SIZE_t max_depth_seen = -1
cdef int rc = 0
cdef Stack stack = Stack(INITIAL_STACK_SIZE)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:90:27: 'Stack' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
cdef Stack stack = Stack(INITIAL_STACK_SIZE)
cdef StackRecord stack_record
with nogil:
# push root node onto stack
rc = stack.push(0, n_node_samples, 0, _TREE_UNDEFINED, 0, INFINITY, 0)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:95:27: Coercion from Python not allowed without the GIL
Error compiling Cython file:
------------------------------------------------------------
...
cdef Stack stack = Stack(INITIAL_STACK_SIZE)
cdef StackRecord stack_record
with nogil:
# push root node onto stack
rc = stack.push(0, n_node_samples, 0, _TREE_UNDEFINED, 0, INFINITY, 0)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:95:27: Calling gil-requiring function not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
cdef Stack stack = Stack(INITIAL_STACK_SIZE)
cdef StackRecord stack_record
with nogil:
# push root node onto stack
rc = stack.push(0, n_node_samples, 0, _TREE_UNDEFINED, 0, INFINITY, 0)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:95:22: Accessing Python attribute not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
cdef Stack stack = Stack(INITIAL_STACK_SIZE)
cdef StackRecord stack_record
with nogil:
# push root node onto stack
rc = stack.push(0, n_node_samples, 0, _TREE_UNDEFINED, 0, INFINITY, 0)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:95:27: Constructing Python tuple not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
cdef Stack stack = Stack(INITIAL_STACK_SIZE)
cdef StackRecord stack_record
with nogil:
# push root node onto stack
rc = stack.push(0, n_node_samples, 0, _TREE_UNDEFINED, 0, INFINITY, 0)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:95:31: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
cdef Stack stack = Stack(INITIAL_STACK_SIZE)
cdef StackRecord stack_record
with nogil:
# push root node onto stack
rc = stack.push(0, n_node_samples, 0, _TREE_UNDEFINED, 0, INFINITY, 0)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:95:50: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
cdef Stack stack = Stack(INITIAL_STACK_SIZE)
cdef StackRecord stack_record
with nogil:
# push root node onto stack
rc = stack.push(0, n_node_samples, 0, _TREE_UNDEFINED, 0, INFINITY, 0)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:95:70: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
if rc == -1:
# got return code -1 - out-of-memory
with gil:
raise MemoryError()
while not stack.is_empty():
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:101:36: Truth-testing Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
if rc == -1:
# got return code -1 - out-of-memory
with gil:
raise MemoryError()
while not stack.is_empty():
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:101:36: Calling gil-requiring function not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
if rc == -1:
# got return code -1 - out-of-memory
with gil:
raise MemoryError()
while not stack.is_empty():
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:101:27: Accessing Python attribute not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
if rc == -1:
# got return code -1 - out-of-memory
with gil:
raise MemoryError()
while not stack.is_empty():
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:101:36: Constructing Python tuple not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
# got return code -1 - out-of-memory
with gil:
raise MemoryError()
while not stack.is_empty():
stack.pop(&stack_record)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:102:25: Discarding owned Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
# got return code -1 - out-of-memory
with gil:
raise MemoryError()
while not stack.is_empty():
stack.pop(&stack_record)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:102:25: Calling gil-requiring function not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
# got return code -1 - out-of-memory
with gil:
raise MemoryError()
while not stack.is_empty():
stack.pop(&stack_record)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:102:21: Accessing Python attribute not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
# got return code -1 - out-of-memory
with gil:
raise MemoryError()
while not stack.is_empty():
stack.pop(&stack_record)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:102:25: Constructing Python tuple not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
# got return code -1 - out-of-memory
with gil:
raise MemoryError()
while not stack.is_empty():
stack.pop(&stack_record)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:102:26: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
raise MemoryError()
while not stack.is_empty():
stack.pop(&stack_record)
start = stack_record.start
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:104:36: Coercion from Python not allowed without the GIL
Error compiling Cython file:
------------------------------------------------------------
...
raise MemoryError()
while not stack.is_empty():
stack.pop(&stack_record)
start = stack_record.start
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:104:36: Accessing Python attribute not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
while not stack.is_empty():
stack.pop(&stack_record)
start = stack_record.start
end = stack_record.end
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:105:34: Coercion from Python not allowed without the GIL
Error compiling Cython file:
------------------------------------------------------------
...
while not stack.is_empty():
stack.pop(&stack_record)
start = stack_record.start
end = stack_record.end
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:105:34: Accessing Python attribute not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
while not stack.is_empty():
stack.pop(&stack_record)
start = stack_record.start
end = stack_record.end
depth = stack_record.depth
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:106:36: Coercion from Python not allowed without the GIL
Error compiling Cython file:
------------------------------------------------------------
...
while not stack.is_empty():
stack.pop(&stack_record)
start = stack_record.start
end = stack_record.end
depth = stack_record.depth
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:106:36: Accessing Python attribute not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
stack.pop(&stack_record)
start = stack_record.start
end = stack_record.end
depth = stack_record.depth
parent = stack_record.parent
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:107:37: Coercion from Python not allowed without the GIL
Error compiling Cython file:
------------------------------------------------------------
...
stack.pop(&stack_record)
start = stack_record.start
end = stack_record.end
depth = stack_record.depth
parent = stack_record.parent
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:107:37: Accessing Python attribute not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
start = stack_record.start
end = stack_record.end
depth = stack_record.depth
parent = stack_record.parent
is_left = stack_record.is_left
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:108:38: Coercion from Python not allowed without the GIL
Error compiling Cython file:
------------------------------------------------------------
...
start = stack_record.start
end = stack_record.end
depth = stack_record.depth
parent = stack_record.parent
is_left = stack_record.is_left
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:108:38: Accessing Python attribute not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
start = stack_record.start
end = stack_record.end
depth = stack_record.depth
parent = stack_record.parent
is_left = stack_record.is_left
impurity = stack_record.impurity
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:109:39: Coercion from Python not allowed without the GIL
Error compiling Cython file:
------------------------------------------------------------
...
start = stack_record.start
end = stack_record.end
depth = stack_record.depth
parent = stack_record.parent
is_left = stack_record.is_left
impurity = stack_record.impurity
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:109:39: Accessing Python attribute not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
end = stack_record.end
depth = stack_record.depth
parent = stack_record.parent
is_left = stack_record.is_left
impurity = stack_record.impurity
n_constant_features = stack_record.n_constant_features
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:110:50: Coercion from Python not allowed without the GIL
Error compiling Cython file:
------------------------------------------------------------
...
end = stack_record.end
depth = stack_record.depth
parent = stack_record.parent
is_left = stack_record.is_left
impurity = stack_record.impurity
n_constant_features = stack_record.n_constant_features
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:110:50: Accessing Python attribute not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
# inspection and interpretation
splitter.node_value(tree.value + node_id * tree.value_stride)
if not is_leaf:
# Push right child on stack
rc = stack.push(split.pos, end, depth + 1, node_id, 0,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:147:35: Coercion from Python not allowed without the GIL
Error compiling Cython file:
------------------------------------------------------------
...
# inspection and interpretation
splitter.node_value(tree.value + node_id * tree.value_stride)
if not is_leaf:
# Push right child on stack
rc = stack.push(split.pos, end, depth + 1, node_id, 0,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:147:35: Calling gil-requiring function not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
# inspection and interpretation
splitter.node_value(tree.value + node_id * tree.value_stride)
if not is_leaf:
# Push right child on stack
rc = stack.push(split.pos, end, depth + 1, node_id, 0,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:147:30: Accessing Python attribute not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
# inspection and interpretation
splitter.node_value(tree.value + node_id * tree.value_stride)
if not is_leaf:
# Push right child on stack
rc = stack.push(split.pos, end, depth + 1, node_id, 0,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:147:35: Constructing Python tuple not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
# inspection and interpretation
splitter.node_value(tree.value + node_id * tree.value_stride)
if not is_leaf:
# Push right child on stack
rc = stack.push(split.pos, end, depth + 1, node_id, 0,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:147:41: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
# inspection and interpretation
splitter.node_value(tree.value + node_id * tree.value_stride)
if not is_leaf:
# Push right child on stack
rc = stack.push(split.pos, end, depth + 1, node_id, 0,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:147:47: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
# inspection and interpretation
splitter.node_value(tree.value + node_id * tree.value_stride)
if not is_leaf:
# Push right child on stack
rc = stack.push(split.pos, end, depth + 1, node_id, 0,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:147:58: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
# inspection and interpretation
splitter.node_value(tree.value + node_id * tree.value_stride)
if not is_leaf:
# Push right child on stack
rc = stack.push(split.pos, end, depth + 1, node_id, 0,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:147:63: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
splitter.node_value(tree.value + node_id * tree.value_stride)
if not is_leaf:
# Push right child on stack
rc = stack.push(split.pos, end, depth + 1, node_id, 0,
split.impurity_right, n_constant_features)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:148:41: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
splitter.node_value(tree.value + node_id * tree.value_stride)
if not is_leaf:
# Push right child on stack
rc = stack.push(split.pos, end, depth + 1, node_id, 0,
split.impurity_right, n_constant_features)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:148:58: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
split.impurity_right, n_constant_features)
if rc == -1:
break
# Push left child on stack
rc = stack.push(start, split.pos, depth + 1, node_id, 1,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:153:35: Coercion from Python not allowed without the GIL
Error compiling Cython file:
------------------------------------------------------------
...
split.impurity_right, n_constant_features)
if rc == -1:
break
# Push left child on stack
rc = stack.push(start, split.pos, depth + 1, node_id, 1,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:153:35: Calling gil-requiring function not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
split.impurity_right, n_constant_features)
if rc == -1:
break
# Push left child on stack
rc = stack.push(start, split.pos, depth + 1, node_id, 1,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:153:30: Accessing Python attribute not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
split.impurity_right, n_constant_features)
if rc == -1:
break
# Push left child on stack
rc = stack.push(start, split.pos, depth + 1, node_id, 1,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:153:35: Constructing Python tuple not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
split.impurity_right, n_constant_features)
if rc == -1:
break
# Push left child on stack
rc = stack.push(start, split.pos, depth + 1, node_id, 1,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:153:36: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
split.impurity_right, n_constant_features)
if rc == -1:
break
# Push left child on stack
rc = stack.push(start, split.pos, depth + 1, node_id, 1,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:153:48: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
split.impurity_right, n_constant_features)
if rc == -1:
break
# Push left child on stack
rc = stack.push(start, split.pos, depth + 1, node_id, 1,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:153:60: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
split.impurity_right, n_constant_features)
if rc == -1:
break
# Push left child on stack
rc = stack.push(start, split.pos, depth + 1, node_id, 1,
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:153:65: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
if rc == -1:
break
# Push left child on stack
rc = stack.push(start, split.pos, depth + 1, node_id, 1,
split.impurity_left, n_constant_features)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:154:41: Converting to Python object not allowed without gil
Error compiling Cython file:
------------------------------------------------------------
...
if rc == -1:
break
# Push left child on stack
rc = stack.push(start, split.pos, depth + 1, node_id, 1,
split.impurity_left, n_constant_features)
^
------------------------------------------------------------
causalml/inference/tree/causal/builder.pyx:154:57: Converting to Python object not allowed without gil
Traceback (most recent call last):
File "<string>", line 2, in <module>
File "<pip-setuptools-caller>", line 34, in <module>
File "/tmp/pip-install-oj6b98hi/causalml_fb14bc15453e4f0585490dd11105553b/setup.py", line 80, in <module>
ext_modules=cythonize(extensions, annotate=True),
File "/home/talha/venv/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1115, in cythonize
cythonize_one(*args)
File "/home/talha/venv/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1238, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: causalml/inference/tree/causal/builder.pyx
Compiling causalml/inference/tree/causal/criterion.pyx because it depends on /home/talha/venv/lib/python3.10/site-packages/Cython/Includes/cpython/type.pxd.
Compiling causalml/inference/tree/causal/builder.pyx because it depends on /home/talha/venv/lib/python3.10/site-packages/Cython/Includes/cpython/type.pxd.
Compiling causalml/inference/tree/uplift.pyx because it depends on /home/talha/venv/lib/python3.10/site-packages/Cython/Includes/cpython/type.pxd.
[1/3] Cythonizing causalml/inference/tree/causal/builder.pyx
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.Installing from source installed the package.
mhfarahani
commented
1 year ago Same issue when trying to install the package on Sagemaker studio or Googlecolab. Downgrading the python to 3.8 did not help. Also, I tried to install it from the source but it did not work.
mhfarahani
commented
1 year ago python 3.8.13, Sagemaker studio
pip install --use-pep517.
dist.fetch_build_eggs(dist.setup_requires)
/opt/conda/lib/python3.8/site-packages/setuptools/installer.py:45: UserWarning: Module numpy was already imported from /opt/conda/lib/python3.8/site-packages/numpy/init.py, but /root/Causality/causalml/.eggs/numpy-1.22.4-py3.8-linux-x86_64.egg is being added to sys.path
pkg_resources.working_set.add(dist, replace=True)
error: command 'gcc' failed: No such file or directory
running install
running bdist_egg
running egg_info
creating causalml.egg-info
writing causalml.egg-info/PKG-INFO
writing dependency_links to causalml.egg-info/dependency_links.txt
writing requirements to causalml.egg-info/requires.txt
writing top-level names to causalml.egg-info/top_level.txt
writing manifest file 'causalml.egg-info/SOURCES.txt'
reading manifest file 'causalml.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
/opt/conda/lib/python3.8/site-packages/setuptools/init.py:85: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try pip install --use-pep517.
dist.fetch_build_eggs(dist.setup_requires)
/opt/conda/lib/python3.8/site-packages/setuptools/installer.py:45: UserWarning: Module numpy was already imported from /opt/conda/lib/python3.8/site-packages/numpy/init.py, but /root/Causality/causalml/.eggs/numpy-1.22.4-py3.8-linux-x86_64.egg is being added to sys.path
pkg_resources.working_set.add(dist, replace=True)
/opt/conda/lib/python3.8/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
/opt/conda/lib/python3.8/site-packages/setuptools/command/easy_install.py:144: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
warning: no files found matching '*.h' under directory 'causalml'
adding license file 'LICENSE'
writing manifest file 'causalml.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build/lib.linux-x86_64-cpython-38
creating build/lib.linux-x86_64-cpython-38/causalml
copying causalml/propensity.py -> build/lib.linux-x86_64-cpython-38/causalml
copying causalml/match.py -> build/lib.linux-x86_64-cpython-38/causalml
copying causalml/features.py -> build/lib.linux-x86_64-cpython-38/causalml
copying causalml/init.py -> build/lib.linux-x86_64-cpython-38/causalml
creating build/lib.linux-x86_64-cpython-38/causalml/dataset
copying causalml/dataset/regression.py -> build/lib.linux-x86_64-cpython-38/causalml/dataset
copying causalml/dataset/synthetic.py -> build/lib.linux-x86_64-cpython-38/causalml/dataset
copying causalml/dataset/classification.py -> build/lib.linux-x86_64-cpython-38/causalml/dataset
copying causalml/dataset/init.py -> build/lib.linux-x86_64-cpython-38/causalml/dataset
creating build/lib.linux-x86_64-cpython-38/causalml/feature_selection
copying causalml/feature_selection/filters.py -> build/lib.linux-x86_64-cpython-38/causalml/feature_selection
copying causalml/feature_selection/init.py -> build/lib.linux-x86_64-cpython-38/causalml/feature_selection
creating build/lib.linux-x86_64-cpython-38/causalml/optimize
copying causalml/optimize/policylearner.py -> build/lib.linux-x86_64-cpython-38/causalml/optimize
copying causalml/optimize/utils.py -> build/lib.linux-x86_64-cpython-38/causalml/optimize
copying causalml/optimize/pns.py -> build/lib.linux-x86_64-cpython-38/causalml/optimize
copying causalml/optimize/unit_selection.py -> build/lib.linux-x86_64-cpython-38/causalml/optimize
copying causalml/optimize/value_optimization.py -> build/lib.linux-x86_64-cpython-38/causalml/optimize
copying causalml/optimize/init.py -> build/lib.linux-x86_64-cpython-38/causalml/optimize
creating build/lib.linux-x86_64-cpython-38/causalml/metrics
copying causalml/metrics/regression.py -> build/lib.linux-x86_64-cpython-38/causalml/metrics
copying causalml/metrics/sensitivity.py -> build/lib.linux-x86_64-cpython-38/causalml/metrics
copying causalml/metrics/const.py -> build/lib.linux-x86_64-cpython-38/causalml/metrics
copying causalml/metrics/classification.py -> build/lib.linux-x86_64-cpython-38/causalml/metrics
copying causalml/metrics/visualize.py -> build/lib.linux-x86_64-cpython-38/causalml/metrics
copying causalml/metrics/init.py -> build/lib.linux-x86_64-cpython-38/causalml/metrics
creating build/lib.linux-x86_64-cpython-38/causalml/inference
copying causalml/inference/init.py -> build/lib.linux-x86_64-cpython-38/causalml/inference
creating build/lib.linux-x86_64-cpython-38/causalml/inference/tree
copying causalml/inference/tree/utils.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tree
copying causalml/inference/tree/plot.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tree
copying causalml/inference/tree/init.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tree
creating build/lib.linux-x86_64-cpython-38/causalml/inference/nn
copying causalml/inference/nn/cevae.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/nn
copying causalml/inference/nn/init.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/nn
creating build/lib.linux-x86_64-cpython-38/causalml/inference/tf
copying causalml/inference/tf/utils.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tf
copying causalml/inference/tf/dragonnet.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tf
copying causalml/inference/tf/init.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tf
creating build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/xlearner.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/utils.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/tlearner.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/rlearner.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/base.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/drlearner.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/tmle.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/slearner.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/init.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/explainer.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
creating build/lib.linux-x86_64-cpython-38/causalml/inference/iv
copying causalml/inference/iv/iv_regression.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/iv
copying causalml/inference/iv/drivlearner.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/iv
copying causalml/inference/iv/init.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/iv
creating build/lib.linux-x86_64-cpython-38/causalml/inference/tree/causal
copying causalml/inference/tree/causal/causaltree.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tree/causal
copying causalml/inference/tree/causal/_tree.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tree/causal
copying causalml/inference/tree/causal/causalforest.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tree/causal
copying causalml/inference/tree/causal/init.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tree/causal
running build_ext
building 'causalml.inference.tree.causal._criterion' extension
gcc -pthread -B /opt/conda/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/lib/python3.8/site-packages/numpy/core/include -I/opt/conda/lib/python3.8/site-packages/numpy/core/include -I/opt/conda/include/python3.8 -c causalml/inference/tree/causal/_criterion.c -o build/temp.linux-x86_64-cpython-38/causalml/inference/tree/causal/_criterion.o -O3
error: command 'gcc' failed: No such file or directoryCalledProcessError Traceback (most recent call last) Cell In[2], line 1 ----> 1 get_ipython().run_cell_magic('sh', '', '\ncd causalml\npip install -r requirements.txt\npython setup.py build_ext --inplace\npython setup.py install\n')
File /opt/conda/lib/python3.8/site-packages/IPython/core/interactiveshell.py:2475, in InteractiveShell.run_cell_magic(self, magic_name, line, cell) 2473 with self.builtin_trap: 2474 args = (magic_arg_s, cell) -> 2475 result = fn(*args, **kwargs) 2477 # The code below prevents the output from being displayed 2478 # when using magics with decodator @output_can_be_silenced 2479 # when the last Python token in the expression is a ';'. 2480 if getattr(fn, magic.MAGIC_OUTPUT_CAN_BE_SILENCED, False):
File /opt/conda/lib/python3.8/site-packages/IPython/core/magics/script.py:153, in ScriptMagics._make_script_magic.
File /opt/conda/lib/python3.8/site-packages/IPython/core/magics/script.py:305, in ScriptMagics.shebang(self, line, cell) 300 if args.raise_error and p.returncode != 0: 301 # If we get here and p.returncode is still None, we must have 302 # killed it but not yet seen its return code. We don't wait for it, 303 # in case it's stuck in uninterruptible sleep. -9 = SIGKILL 304 rc = p.returncode or -9 --> 305 raise CalledProcessError(rc, cell)
CalledProcessError: Command 'b'\ncd causalml\npip install -r requirements.txt\npython setup.py build_ext --inplace\npython setup.py install\n'' returned non-zero exit status 1.
jakirhasantalukder
commented
1 year ago !pip install Causalml !pip install numpy==1.23.5
!git clone https://github.com/uber/causalml.git !cd causalml !pip install -r /content/causalml/requirements.txt !python setup.py build_ext --inplace !pip /content/causalml/setup.py install !python setup.py install
! git clone https://github.com/uber/causalml.git ! cd causalml ! pip install -r /content/causalml/requirements-test.txt ! pip install causalml[tf] ! pip install -U numpy==1.23.5
!pip install numpy==1.23.4
!pip install -U scikit-learn==1.0.2
!pip uninstall scikit-learn !pip install scikit-learn==1.0.2
import pandas as pd import numpy as np from matplotlib import pyplot as plt import seaborn as sns import torch
from sklearn.linear_model import LinearRegression from sklearn.model_selection import train_test_split from xgboost import XGBRegressor from lightgbm import LGBMRegressor from sklearn.metrics import mean_absolute_error from sklearn.metrics import mean_squared_error as mse from scipy.stats import entropy import warnings import logging
from causalml.inference.meta import BaseXRegressor, BaseRRegressor, BaseSRegressor, BaseTRegressor from causalml.inference.nn import CEVAE from causalml.propensity import ElasticNetPropensityModel from causalml.metrics import * from causalml.dataset import simulate_hidden_confounder
%matplotlib inline
warnings.filterwarnings('ignore') logger = logging.getLogger('causalml') logger.setLevel(logging.DEBUG)
plt.style.use('fivethirtyeight') sns.set_palette('Paired') plt.rcParams['figure.figsize'] = (12,8)
ras44
commented
1 year ago The OP @g0odplayer00 describes not being able to run causalML in a Google Colab.
I am able to run !pip install causalml in a Google colab, but did have to fix numpy==1.23 and the restart the runtime.
For a working example, see:
https://colab.research.google.com/drive/1mVKxa5cKXZSLcnuEYGlvePhWPL00FH_E?usp=sharing
For other issues, like that described by @talhaanwarch, please make sure that you have gcc and g++ installed, for example:
sudo apt-get install -y gcc g++Please note that colab currently run's python 3.10.12, which is not supported and which will break when attempting to run tests. Currently only py 3.7, 3.8, and 3.9 are supported.
jakirhasantalukder
commented
1 year ago Wonderful!
From: ras44 @.> Sent: Thursday, 13 July 2023 2:16 AM To: uber/causalml @.> Cc: Talukder, Md Jakir Hasan - talmh001 @.>; Comment @.> Subject: Re: [uber/causalml] Unable to install causalml (Issue #609)
The OP @g0odplayer00https://github.com/g0odplayer00 describes not being able to run causalML in a Google Colab.
I am able to run !pip install causalml in a Google colab, but did have to fix numpy==1.23 and the restart the runtime.
For a working example, see:
https://colab.research.google.com/drive/1mVKxa5cKXZSLcnuEYGlvePhWPL00FH_E?usp=sharinghttps://colab.research.google.com/drive/1mVKxa5cKXZSLcnuEYGlvePhWPL00FH_E?usp=sharing
For other issues, like that described by @talhaanwarchhttps://github.com/talhaanwarch, please make sure that you have gcc and g++ installed, for example:
sudo apt-get install -y gcc g++
— Reply to this email directly, view it on GitHubhttps://github.com/uber/causalml/issues/609#issuecomment-1632877213, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AX3WNRENBTXIJZBTRXYI7ELXP3IERANCNFSM6AAAAAAWK5QQHE. You are receiving this because you commented.Message ID: @.**@.>>
vincewu51
commented
1 year ago Closed since the issue is solved.
Describe the bug A clear and concise description of what the bug is.
To Reproduce Steps to reproduce the behavior:
unable to install causalml in any means
Expected behavior A clear and concise description of what you expected to happen.
Screenshots If applicable, add screenshots to help explain your problem.
Environment (please complete the following information): running on google colab
Additional context Add any other context about the problem here.