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uber / kraken

P2P Docker registry capable of distributing TBs of data in seconds
Apache License 2.0
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Unable to download the kraken database #314

Open mathavanpu opened 2 years ago

mathavanpu commented 2 years ago

Hello I am trying to download the database using the command

(metawrap_prokka) [suresh@node4 2.Clean]$ kraken-build --standard --threads 50 --db standard

Error Message: Found jellyfish v1.1.12 --2021-12-20 10:44:08-- ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/accession2taxid/nucl_gb.accession2taxid.gz => ‘nucl_gb.accession2taxid.gz’ Resolving ftp.ncbi.nlm.nih.gov... 130.14.250.7, 130.14.250.10, 2607:f220:41f:250::228, ... Connecting to ftp.ncbi.nlm.nih.gov|130.14.250.7|:21... connected. Logging in as anonymous ... Logged in! ==> SYST ... done. ==> PWD ... done. ==> TYPE I ... done. ==> CWD (1) /pub/taxonomy/accession2taxid ... done. ==> SIZE nucl_gb.accession2taxid.gz ... 2136404399 ==> PASV ... done. ==> RETR nucl_gb.accession2taxid.gz ... done. Length: 2136404399 (2.0G) (unauthoritative)

nucl_gb.accession2taxid.gz 100%[================================================================================================>] 2.06G 1.65MB/s in 32m 6s

2021-12-20 11:16:18 (1.09 MB/s) - ‘nucl_gb.accession2taxid.gz’ saved [2210782615]

--2021-12-20 11:16:18-- ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/accession2taxid/nucl_wgs.accession2taxid.gz => ‘nucl_wgs.accession2taxid.gz’ Resolving ftp.ncbi.nlm.nih.gov... 165.112.9.229, 165.112.9.230, 2607:f220:41f:250::229, ... Connecting to ftp.ncbi.nlm.nih.gov|165.112.9.229|:21... connected. Logging in as anonymous ... Logged in! ==> SYST ... done. ==> PWD ... done. ==> TYPE I ... done. ==> CWD (1) /pub/taxonomy/accession2taxid ... done. ==> SIZE nucl_wgs.accession2taxid.gz ... 3814389489 ==> PASV ... done. ==> RETR nucl_wgs.accession2taxid.gz ... done. Length: 3814389489 (3.6G) (unauthoritative)

nucl_wgs.accession2taxid.gz 100%[================================================================================================>] 3.61G 1.64MB/s in 42m 1s

2021-12-20 11:58:23 (1.47 MB/s) - ‘nucl_wgs.accession2taxid.gz’ saved [3875497401]

Downloaded accession to taxon map(s) --2021-12-20 11:58:23-- ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz => ‘taxdump.tar.gz’ Resolving ftp.ncbi.nlm.nih.gov... 165.112.9.229, 130.14.250.13, 2607:f220:41e:250::12, ... Connecting to ftp.ncbi.nlm.nih.gov|165.112.9.229|:21... connected. Logging in as anonymous ... Logged in! ==> SYST ... done. ==> PWD ... done. ==> TYPE I ... done. ==> CWD (1) /pub/taxonomy ... done. ==> SIZE taxdump.tar.gz ... 56919316 ==> PASV ... done. ==> RETR taxdump.tar.gz ... done. Length: 56919316 (54M) (unauthoritative)

taxdump.tar.gz 100%[================================================================================================>] 54.28M 1.67MB/s in 40s

2021-12-20 11:59:07 (1.35 MB/s) - ‘taxdump.tar.gz’ saved [56919316]

Downloaded taxonomy tree data Uncompressing taxonomy data... gzip: abort: corrupted gzip stream -- crc32 mismatch: nucl_gb.accession2taxid.gz

Plase help me to solve this issue

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