Closed spamula closed 4 years ago
kenns29
commented
4 years ago @spamula I cannot reproduce this error. Do you mind do a pip freeze to print out all the dependencies and check your browser console to see if there are any error messages?
Please also do a jupyter nbextension list.
kenns29
commented
4 years ago I noticed that the Jupyter wrapper may have issues with the conda environment. I will look into this issue.
spamula
commented
4 years ago Hi @kenns29
Here's the pip freeze:
absl-py==0.5.0 addfips==0.2.2 affine==2.3.0 alabaster==0.7.12 alembic==1.0.5 amqp==2.3.2 anyconfig==0.9.7 apache-beam==2.15.0 apache-libcloud==2.5.0 aplus==0.11.0 arcgis==1.6.0 argh==0.26.2 arrow==0.12.1 asn1crypto==0.24.0 astor==0.7.1 astroid==2.2.5 astropy==3.1.2 atomicwrites==1.3.0 attrs==19.1.0 autopep8==1.3.5 avro-python3==1.9.1 azure-common==1.1.18 azure-storage-blob==1.5.0 azure-storage-common==1.4.0 Babel==2.6.0 backcall==0.1.0 backports.os==0.1.1 backports.shutil-get-terminal-size==1.0.0 beautifulsoup4==4.7.1 billiard==3.5.0.5 binaryornot==0.4.4 bitarray==0.8.3 bkcharts==0.2 blaze==0.10.1 bleach==3.1.0 bokeh==1.0.4 boto==2.49.0 boto3==1.9.103 botocore==1.12.103 Bottleneck==1.2.1 bqplot==0.11.6 branca==0.3.1 bz2file==0.98 CacheControl==0.12.5 cachetools==3.1.1 cchardet==2.1.4 celery==4.2.1 certifi==2019.3.9 cffi==1.12.2 chardet==3.0.4 cleanco==1.3 Click==7.0 click-plugins==1.0.4 cligj==0.5.0 cloudpickle==0.8.0 colorama==0.4.1 coloredlogs==10.0 colorlover==0.2.1 contextily==1.0rc2 contextlib2==0.5.5 convertdate==2.1.3 cookiecutter==1.6.0 crcmod==1.7 cryptography==2.6.1 cufflinks==0.14.6 cycler==0.10.0 cymem==1.31.2 Cython==0.29.11 cytoolz==0.9.0.1 dash==1.7.0 dash-core-components==1.6.0 dash-cytoscape==0.1.1 dash-daq==0.1.4 dash-html-components==1.0.2 dash-renderer==1.2.2 dash-table==4.5.1 dash-table-experiments==0.6.0 dask==1.2.2 datashape==0.5.2 dateparser==0.7.1 decorator==4.4.0 decore==0.0.1 defusedxml==0.6.0 Deprecated==1.2.5 descartes==1.1.0 dill==0.2.9 Distance==0.1.3 distributed==1.26.0 docopt==0.6.2 docutils==0.14 elasticsearch==6.3.1 eli5==0.8 entrypoints==0.3 enum34==1.1.6 ephem==3.7.6.0 et-xmlfile==1.0.1 ez-setup==0.9 fastavro==0.21.24 fastcache==1.0.2 fasteners==0.15 featuretools==0.13.0 filelock==2.0.13 Fiona==1.8.0 Flask==1.0.3 Flask-AppBuilder==1.12.2 Flask-Babel==0.12.2 Flask-Cache==0.13.1 Flask-Caching==1.4.0 Flask-Compress==1.4.0 Flask-Cors==3.0.8 Flask-Login==0.4.1 Flask-Migrate==2.3.1 Flask-OpenID==1.2.5 Flask-Script==2.0.6 Flask-SQLAlchemy==2.3.2 Flask-Testing==0.7.1 Flask-WTF==0.14.2 flower==0.9.2 fsspec==0.6.1 funcsigs==1.0.2 furl==2.0.0 future==0.16.0 fuzzywuzzy==0.16.0 gast==0.2.2 gcsfs==0.2.3 gekko==0.1rc3 gender-guesser==0.4.0 gensim==3.5.0 geographiclib==1.49 geojson==2.4.1 geopandas==0.5.1 geopy==1.18.1 gevent==1.4.0 gitdb2==2.0.5 GitPython==2.1.11 glob2==0.6 google-api-core==1.12.0 google-api-python-client==1.7.11 google-apitools==0.5.28 google-auth==1.6.3 google-auth-httplib2==0.0.3 google-auth-oauthlib==0.4.1 google-cloud-bigquery==1.16.0 google-cloud-bigtable==0.32.2 google-cloud-core==1.0.2 google-cloud-datastore==1.7.4 google-cloud-pubsub==0.39.1 google-cloud-storage==1.16.1 google-pasta==0.1.8 google-resumable-media==0.3.2 googleapis-common-protos==1.6.0 googlemaps==3.1.4 graphviz==0.13.2 greenlet==0.4.15 grpc-google-iam-v1==0.11.4 grpcio==1.15.0 gunicorn==19.9.0 h5py==2.9.0 hdbscan==0.8.15 hdfs==2.5.8 HeapDict==1.0.0 holidays==0.9.10 html5lib==1.0.1 httplib2==0.12.0 humanfriendly==4.18 humanize==0.5.1 hyperopt==0.1.2 icc-rt==2019.0 idna==2.8 ijson==2.3 imageio==2.5.0 imagesize==1.1.0 iml==0.6.0 importlib-metadata==0.0 intel-openmp==2019.0 ipydatawidgets==4.0.1 ipykernel==5.1.1 ipyleaflet==0.11.1 ipympl==0.3.3 ipython==7.5.0 ipython-genutils==0.2.0 ipyvolume==0.5.2 ipyvuetify==0.1.7 ipywebrtc==0.5.0 ipywidgets==7.5.1 iso3166==0.8 isodate==0.6.0 isort==4.3.16 itsdangerous==1.1.0 jdcal==1.4 jedi==0.13.3 jeepney==0.4 jellyfish==0.7.1 Jinja2==2.10.1 jinja2-time==0.2.0 jmespath==0.9.3 joblib==0.13.2 jsonlines==1.2.0 jsonmodels==2.4 jsonpickle==0.9.6 jsonschema==3.0.1 jupyter==1.0.0 jupyter-client==5.2.4 jupyter-console==6.0.0 jupyter-contrib-core==0.3.3 jupyter-contrib-nbextensions==0.5.0 jupyter-core==4.4.0 jupyter-highlight-selected-word==0.2.0 jupyter-latex-envs==1.4.4 jupyter-nbextensions-configurator==0.4.1 jupyterlab==0.35.4 jupyterlab-launcher==0.10.2 jupyterlab-server==0.2.0 jupyterthemes==0.20.0 kedro==0.14.1 keplergl==0.1.0a8 Keras-Applications==1.0.8 Keras-Preprocessing==1.1.0 keyring==19.0.1 kiwisolver==1.1.0 kmodes==0.9 kombu==4.2.2.post1 landsatxplore==0.0.5 lazy-object-proxy==1.3.1 lesscpy==0.13.0 libpagure==0.9 lightgbm==2.3.1 lime==0.1.1.34 linear-tsv==1.1.0 llvmlite==0.28.0 locket==0.2.0 lunardate==0.2.0 lxml==4.3.2 Mako==1.0.7 mapbox==0.18.0 Markdown==3.0.1 MarkupSafe==1.1.1 matplotlib==3.1.0 matplotlib-venn==0.11.5 mccabe==0.6.1 memory-profiler==0.54.0 mercantile==1.1.2 missingno==0.4.1 mistune==0.8.4 mkl==2019.0 mkl-fft==1.0.6 mkl-random==1.0.1.1 mlvis==0.0.9 mock==2.0.0 monotonic==1.5 more-itertools==7.0.0 mpmath==1.1.0 msgpack==0.6.1 multipledispatch==0.6.0 munch==2.3.2 murmurhash==0.28.0 mysql-connector==2.1.7 nameparser==0.5.7 nbconvert==5.5.0 nbformat==4.4.0 networkx==2.3 nltk==3.4 nose==1.3.7 notebook==5.7.8 ntlm-auth==1.2.0 numba==0.43.1 numexpr==2.6.9 numpy==1.17.4 numpydoc==0.8.0 oauth2client==4.1.3 oauthlib==3.0.1 odo==0.5.0 ogr==0.0.3 olefile==0.46 opt-einsum==3.1.0 orderedmultidict==1.0 packaging==19.0 pandas==0.25.3 pandas-gbq==0.10.0 pandocfilters==1.4.2 parso==0.4.0 partd==1.0.0 patsy==0.5.1 pbr==5.4.3 pdpipe==0.0.35 pexpect==4.7.0 pickleshare==0.7.5 Pillow==6.0.0 plotly==4.4.1 plotly-express==0.4.1 plotly-geo==1.0.0 pluggy==0.11.0 ply==3.11 polyline==1.3.2 poyo==0.4.1 probableparsing==0.0.1 progressbar2==3.42.0 prometheus-client==0.6.0 prompt-toolkit==2.0.9 protobuf==3.6.1 psutil==5.6.3 ptyprocess==0.6.0 py==1.8.0 pyarrow==0.12.0 pyasn1==0.4.5 pyasn1-modules==0.2.5 pycodestyle==2.5.0 pycparser==2.19 pydata-google-auth==0.1.3 pydot==1.4.1 pydotplus==2.0.2 PyGithub==1.43.5 Pygments==2.4.0 PyJWT==1.7.1 pymongo==3.9.0 PyOpenGL==3.1.0 pyparsing==2.4.0 pyproj==1.9.5.1 pyrsistent==0.15.2 pyshp==2.1.0 pystan==2.18.1.0 pytest==4.5.0 pytest-runner==4.4 python-crfsuite==0.9.6 python-dateutil==2.8.0 python-editor==1.0.3 python-gitlab==1.8.0 python-json-logger==0.1.9 python-utils==2.3.0 python3-openid==3.1.0 pythreejs==2.1.1 pytz==2019.1 PyWavelets==1.0.3 PyYAML==3.13 pyzmq==18.0.1 qtconsole==4.4.3 rasterio==1.1.1 recordlinkage==0.13.2 regex==2019.3.12 requests==2.22.0 requests-oauthlib==1.2.0 retrying==1.3.3 rsa==4.0 Rtree==0.8.3 s3fs==0.4.0 s3transfer==0.2.0 SALib==1.3.4 scikit-image==0.15.0 scikit-learn==0.21.1 scikit-plot==0.3.7 scipy==1.3.0 seaborn==0.9.0 SecretStorage==3.1.1 Send2Trash==1.5.0 setuptools-git==1.2 shap==0.29.1 Shapely==1.6.4.post2 singledispatch==3.4.0.3 six==1.12.0 sklearn==0.0 skope-rules==1.0.0 skutil==0.0.16 smart-open==1.9.0 smmap2==2.0.5 snowballstemmer==1.2.1 snuggs==1.4.7 sortedcontainers==2.1.0 soupsieve==1.8 Sphinx==1.8.5 sphinxcontrib-websupport==1.1.0 SQLAlchemy==1.3.5 statsmodels==0.10.2 strct==0.0.30 swifter==0.289 tables==3.5.1 tabulate==0.8.3 tbb==2019.0 tbb4py==2019.0 tblib==1.3.2 tensorboard==2.0.1 tensorflow==2.0.0 tensorflow-estimator==2.0.1 tensorflow-serving-api==2.0.0 termcolor==1.1.0 terminado==0.8.1 testpath==0.4.2 toolz==0.9.0 toposort==1.5 tornado==6.0.2 tqdm==4.32.1 traitlets==4.3.2 traittypes==0.2.1 typed-ast==1.3.1 typing==3.6.6 tzlocal==1.5.1 uritemplate==3.0.0 urllib3==1.25.2 usaddress==0.5.10 vaex==2.0.2 vaex-arrow==0.3.5 vaex-astro==0.5.0 vaex-core==0.9.2 vaex-hdf5==0.5.2 vaex-jupyter==0.3.0 vaex-ml==0.5.0 vaex-server==0.2.1 vaex-ui==0.2.2 vaex-viz==0.3.4 vine==1.1.4 watermark==1.8.1 wcwidth==0.1.7 webencodings==0.5.1 Werkzeug==0.15.4 whichcraft==0.4.1 widgetsnbextension==3.5.0 witwidget==1.5.0 wrapt==1.11.1 WTForms==2.2.1 xarray==0.12.3 xgboost==0.90 xlrd==1.2.0 XlsxWriter==1.1.5 yellowbrick==0.9.1 zict==0.1.4
The jupyter nbextension list is as below:
Known nbextensions: config dir: /home/XXX.jupyter/nbconfig notebook section nbextensions_configurator/config_menu/main enabled
kenns29
commented
4 years ago @spamula try to enable the jupyter-js-widgets nbextension. It is a dependency.
spamula
commented
4 years ago I'm not sure how I missed this with the install but got the jupyter-js-widgets set up and all working now @kenns29 thanks!
Casyfill
commented
4 years ago @spamula how did you do that?
Firenze11
commented
4 years ago Closing the issue since it is resolved.
I've installed the mlvis extension and followed the steps installing the nbextension and then enabling it.
When following the manifold example notebook (https://github.com/uber/manifold/blob/master/bindings/jupyter/notebooks/manifold.ipynb) and running the first cell I get the output:
Manifold(props='{"data": {"x": [{"feature_0": 318, "feature_1": "A"}, {"feature_0": 213, "feature_1": "B"}, {"…
And no visual output. Is there a step that I need to change to get the notebook visual output working?
I've even tried disabling the other extensions to see whether it would work and no change.
I'm running jupyter version 1.0.