Closed SiebertLooijeAtBillyGrace closed 5 months ago
edwinnglabs
commented
5 months ago @SiebertLooijeAtBillyGrace
Could you report the version of cmdstanpy (if it does not exist, try pip install cmdstanpy?) ? I suspect it may be just due to the old version of cmdstanpy. According to the doc, force_compile is a valid arg in current cmdstanpy version.
edwinnglabs
commented
5 months ago Looks like the version needs to be upgraded to 1.2.1 given the very first commit related to this.
SiebertLooijeAtBillyGrace
commented
5 months ago Hi @edwinnglabs, thanks for responding.
When I install pip install cmdstanpy==1.2.1, I get the same error.
Source:
But you are able to install the orbit-ml package in linux on python 3.10 version?
This is the full trace logs:
_Building wheel for orbit-ml (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [460 lines of output]
/databricks/python/lib/python3.10/site-packages/setuptools/config/_apply_pyprojecttoml.py:196: UserWarning: install_requires overwritten in pyproject.toml (dependencies)
warnings.warn(msg)
running bdist_wheel
running build
running build_py
Running build py command.
Not a dry run, run with build
NumExpr defaulting to 8 threads.
Installing CmdStan version: 2.34.1
Install directory: /root/.cmdstan
Downloading CmdStan version 2.34.1
0.00B [00:00, ?B/s]
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Download successful, file: /tmp/tmprh2req_u
Extracting distribution
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O_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/queuing_rw_mutex.cpp g++ -o reader_writer_lock.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/reader_writer_lock.cpp g++ -o spin_rw_mutex.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/spin_rw_mutex.cpp g++ -o x86_rtm_rw_mutex.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/x86_rtm_rw_mutex.cpp g++ -o spin_mutex.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/spin_mutex.cpp g++ -o critical_section.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/critical_section.cpp g++ -o mutex.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/mutex.cpp g++ -o recursive_mutex.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/recursive_mutex.cpp g++ -o condition_variable.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/condition_variable.cpp g++ -o tbb_thread.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/tbb_thread.cpp g++ -o concurrent_monitor.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/concurrent_monitor.cpp g++ -o semaphore.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/semaphore.cpp g++ -o private_server.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/private_server.cpp g++ -o rml_tbb.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/rml/client/rml_tbb.cpp sh ../tbb_2020.3/build/version_info_linux.sh g++ -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I. >version_string.ver g++ -o tbb_misc_ex.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/tbb_misc_ex.cpp g++ -o task.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/task.cpp g++ -o task_group_context.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/task_group_context.cpp g++ -o governor.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/governor.cpp g++ -o market.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/market.cpp g++ -o arena.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/arena.cpp g++ -o scheduler.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/scheduler.cpp g++ -o observer_proxy.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/observer_proxy.cpp g++ -o tbb_statistics.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/tbb_statistics.cpp g++ -o tbb_main.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/tbb_main.cpp g++ -o concurrent_vector_v2.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/old/concurrent_vector_v2.cpp g++ -o concurrent_queue_v2.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/old/concurrent_queue_v2.cpp g++ -o spin_rw_mutex_v2.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/old/spin_rw_mutex_v2.cpp g++ -o task_v2.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -DTBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/old/task_v2.cpp sh ../tbb_2020.3/build/generate_tbbvars.sh echo "INPUT (libtbb.so.2)" > libtbb.so g++ -E -x c++ ../tbb_2020.3/src/tbb/lin64-tbb-export.def -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include > tbb.def g++ -o tbb_misc.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I. ../tbb_2020.3/src/tbb/tbb_misc.cpp g++ -fPIC -o libtbb.so.2 concurrent_hash_map.o concurrent_queue.o concurrent_vector.o dynamic_link.o itt_notify.o cache_aligned_allocator.o pipeline.o queuing_mutex.o queuing_rw_mutex.o reader_writer_lock.o spin_rw_mutex.o x86_rtm_rw_mutex.o spin_mutex.o critical_section.o mutex.o recursive_mutex.o condition_variable.o tbb_thread.o concurrent_monitor.o semaphore.o private_server.o rml_tbb.o tbb_misc.o tbb_misc_ex.o task.o task_group_context.o governor.o market.o arena.o scheduler.o observer_proxy.o tbb_statistics.o tbb_main.o concurrent_vector_v2.o concurrent_queue_v2.o spin_rw_mutex_v2.o task_v2.o -ldl -lrt -shared -Wl,-soname=libtbb.so.2 -pthread -m64 -Wl,-L,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" -Wl,--version-script,tbb.def make[1]: Leaving directory '/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb' g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -Wl,-L,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" bin/cmdstan/print.o stan/lib/stan_math/lib/tbb/libtbb.so.2 -ltbb -o bin/print g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -Wl,-L,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" bin/cmdstan/diagnose.o stan/lib/stan_math/lib/tbb/libtbb.so.2 -ltbb -o bin/diagnose g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -Wl,-L,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" bin/cmdstan/stansummary.o stan/lib/stan_math/lib/tbb/libtbb.so.2 -ltbb -o bin/stansummary
--- CmdStan v2.34.1 built ---
Test model compilation
cmd: make examples/bernoulli/bernoulli
cwd: None
g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -c -MT stan/src/stan/model/model_header_11_4.hpp.gch -MT stan/src/stan/model/model_header_11_4.d -MM -E -MG -MP -MF stan/src/stan/model/model_header_11_4.d stan/src/stan/model/model_header.hpp
g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -c -MT src/cmdstan/main.o -MM -E -MG -MP -MF src/cmdstan/main.d src/cmdstan/main.cpp
--- Translating Stan model to C++ code ---
bin/stanc --o=examples/bernoulli/bernoulli.hpp examples/bernoulli/bernoulli.stan
--- Compiling C++ code ---
g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -c -Wno-ignored-attributes -x c++ -o examples/bernoulli/bernoulli.o examples/bernoulli/bernoulli.hpp
--- Linking model ---
g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -Wl,-L,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" examples/bernoulli/bernoulli.o src/cmdstan/main.o -ltbb stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_nvecserial.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_cvodes.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_idas.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_kinsol.a stan/lib/stan_math/lib/tbb/libtbb.so.2 -o examples/bernoulli/bernoulli
rm examples/bernoulli/bernoulli.o examples/bernoulli/bernoulli.hpp
Installed cmdstan-2.34.1
Installed cmdstanpy package.
Compiling stan file in place: orbit/stan/dlt.stan
Traceback (most recent call last):
File "/local_disk0/.ephemeral_nfs/envs/pythonEnv-6a6b44f3-2770-461a-b4e5-b9630f73e8b7/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in <module>
main()
File "/local_disk0/.ephemeral_nfs/envs/pythonEnv-6a6b44f3-2770-461a-b4e5-b9630f73e8b7/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/local_disk0/.ephemeral_nfs/envs/pythonEnv-6a6b44f3-2770-461a-b4e5-b9630f73e8b7/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 261, in build_wheel
return _build_backend().build_wheel(wheel_directory, config_settings,
File "/databricks/python/lib/python3.10/site-packages/setuptools/build_meta.py", line 244, in build_wheel
return self._build_with_temp_dir(['bdist_wheel'], '.whl',
File "/databricks/python/lib/python3.10/site-packages/setuptools/build_meta.py", line 229, in _build_with_temp_dir
self.run_setup()
File "/databricks/python/lib/python3.10/site-packages/setuptools/build_meta.py", line 174, in run_setup
exec(code, locals())
File "<string>", line 129, in <module>
File "/databricks/python/lib/python3.10/site-packages/setuptools/__init__.py", line 87, in setup
return distutils.core.setup(**attrs)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 185, in setup
return run_commands(dist)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
dist.run_commands()
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 973, in run_commands
self.run_command(cmd)
File "/databricks/python/lib/python3.10/site-packages/setuptools/dist.py", line 1217, in run_command
super().run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 992, in run_command
cmd_obj.run()
File "/databricks/python/lib/python3.10/site-packages/wheel/bdist_wheel.py", line 299, in run
self.run_command('build')
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 319, in run_command
self.distribution.run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/dist.py", line 1217, in run_command
super().run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 992, in run_command
cmd_obj.run()
File "/databricks/python/lib/python3.10/site-packages/setuptools/command/build.py", line 24, in run
super().run()
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/command/build.py", line 132, in run
self.run_command(cmd_name)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 319, in run_command
self.distribution.run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/dist.py", line 1217, in run_command
super().run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 992, in run_command
cmd_obj.run()
File "<string>", line 117, in run
File "<string>", line 98, in build_stan_models
File "<string>", line 92, in build_model
TypeError: CmdStanModel.__init__() got an unexpected keyword argument 'force_compile'
[end of output]note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for orbit-ml Failed to build orbit-ml ERROR: Could not build wheels for orbit-ml, which is required to install pyproject.toml-based projects_
SiebertLooijeAtBillyGrace
commented
5 months ago Update: For now we went back to %pip install orbit-ml==1.1.4.2, which seems to work again. However 1.1.4.6 does not seem to work.
edwinnglabs
commented
5 months ago I still wonder whether the cmdstanpy is >= 1.2.1. Could you print the version right before you install orbit-ml? @SiebertLooijeAtBillyGrace
Describe the bug When installing the orbit-ml package (version 1.1.4.6) with pip install orbit-ml it gives the following error:
--- Linking model --- g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -Wl,-L,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" examples/bernoulli/bernoulli.o src/cmdstan/main.o -ltbb stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_nvecserial.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_cvodes.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_idas.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_kinsol.a stan/lib/stan_math/lib/tbb/libtbb.so.2 -o examples/bernoulli/bernoulli rm examples/bernoulli/bernoulli.o examples/bernoulli/bernoulli.hpp Installed cmdstan-2.34.1 Installed cmdstanpy package. Compiling stan file in place: orbit/stan/dlt.stan Traceback (most recent call last): File "/local_disk0/.ephemeral_nfs/envs/pythonEnv-96e2b9e2-4541-4999-b568-8098fe131a8d/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in
main()
File "/local_disk0/.ephemeral_nfs/envs/pythonEnv-96e2b9e2-4541-4999-b568-8098fe131a8d/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main
json_out['return_val'] = hook(hook_input['kwargs'])
File "/local_disk0/.ephemeral_nfs/envs/pythonEnv-96e2b9e2-4541-4999-b568-8098fe131a8d/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 261, in build_wheel
return _build_backend().build_wheel(wheel_directory, config_settings,
File "/databricks/python/lib/python3.10/site-packages/setuptools/build_meta.py", line 244, in build_wheel
return self._build_with_temp_dir(['bdist_wheel'], '.whl',
File "/databricks/python/lib/python3.10/site-packages/setuptools/build_meta.py", line 229, in _build_with_temp_dir
self.run_setup()
File "/databricks/python/lib/python3.10/site-packages/setuptools/build_meta.py", line 174, in run_setup
exec(code, locals())
File "", line 129, in
File "/databricks/python/lib/python3.10/site-packages/setuptools/init.py", line 87, in setup
return distutils.core.setup( attrs)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 185, in setup
return run_commands(dist)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
dist.run_commands()
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 973, in run_commands
self.run_command(cmd)
File "/databricks/python/lib/python3.10/site-packages/setuptools/dist.py", line 1217, in run_command
super().run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 992, in run_command
cmd_obj.run()
File "/databricks/python/lib/python3.10/site-packages/wheel/bdist_wheel.py", line 299, in run
self.run_command('build')
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 319, in run_command
self.distribution.run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/dist.py", line 1217, in run_command
super().run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 992, in run_command
cmd_obj.run()
File "/databricks/python/lib/python3.10/site-packages/setuptools/command/build.py", line 24, in run
super().run()
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/command/build.py", line 132, in run
self.run_command(cmd_name)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 319, in run_command
self.distribution.run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/dist.py", line 1217, in run_command
super().run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 992, in run_command
cmd_obj.run()
File "", line 117, in run
File "", line 98, in build_stan_models
File "", line 92, in build_model
TypeError: CmdStanModel.init() got an unexpected keyword argument 'force_compile'
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for orbit-ml Failed to build orbit-ml ERROR: Could not build wheels for orbit-ml, which is required to install pyproject.toml-based projects
To Reproduce pip install orbit-ml==1.1.4.6 on a python 3.10 version
Expected behavior pip install orbit-ml==1.1.4.2 did work on python 3.10 version,
Screenshots
Environment (please complete the following information):