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uc-bd2k / GREIN

GREIN : GEO RNA-seq Experiments Interactive Navigator
https://shiny.ilincs.org/grein
GNU General Public License v2.0
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Any possibility for mass download or API for dataset #24

Closed hkhllyzh closed 9 months ago

hkhllyzh commented 1 year ago

Hi, I really appreciate the webserver and its high-qualitied RNA-seq datasets. However, I am working on a project requiring LOTS of GEO RNA-seq datasets, but I found downloading manually or using crawler tools like selenium inefficient for GREIN. Is their any possibility for the team to offer access for database files, like an archive of RNA-seq rawcount.csv files, or have an API like getGEO in R? Thanks a lot.

michalkouril commented 1 year ago

Hello, Thanks for the suggestion -- sounds useful and we'll add it our roadmap. Unfortunately I don't have a timeline yet. Michal